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Rules for modeling signal-transduction systems.
Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W. Hlavacek WS, et al. Among authors: fontana w. Sci STKE. 2006 Jul 18;2006(344):re6. doi: 10.1126/stke.3442006re6. Sci STKE. 2006. PMID: 16849649 Review.
Internal coarse-graining of molecular systems.
Feret J, Danos V, Krivine J, Harmer R, Fontana W. Feret J, et al. Among authors: fontana w. Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6453-8. doi: 10.1073/pnas.0809908106. Epub 2009 Apr 3. Proc Natl Acad Sci U S A. 2009. PMID: 19346467 Free PMC article.
The Kappa platform for rule-based modeling.
Boutillier P, Maasha M, Li X, Medina-Abarca HF, Krivine J, Feret J, Cristescu I, Forbes AG, Fontana W. Boutillier P, et al. Among authors: fontana w. Bioinformatics. 2018 Jul 1;34(13):i583-i592. doi: 10.1093/bioinformatics/bty272. Bioinformatics. 2018. PMID: 29950016 Free PMC article.
Nonequilibrium phase transitions in biomolecular signal transduction.
Smith E, Krishnamurthy S, Fontana W, Krakauer D. Smith E, et al. Among authors: fontana w. Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Nov;84(5 Pt 1):051917. doi: 10.1103/PhysRevE.84.051917. Epub 2011 Nov 23. Phys Rev E Stat Nonlin Soft Matter Phys. 2011. PMID: 22181454
Optimizing ring assembly reveals the strength of weak interactions.
Deeds EJ, Bachman JA, Fontana W. Deeds EJ, et al. Among authors: fontana w. Proc Natl Acad Sci U S A. 2012 Feb 14;109(7):2348-53. doi: 10.1073/pnas.1113095109. Epub 2012 Jan 30. Proc Natl Acad Sci U S A. 2012. PMID: 22308356 Free PMC article.
Crosstalk and competition in signaling networks.
Rowland MA, Fontana W, Deeds EJ. Rowland MA, et al. Among authors: fontana w. Biophys J. 2012 Dec 5;103(11):2389-98. doi: 10.1016/j.bpj.2012.10.006. Biophys J. 2012. PMID: 23283238 Free PMC article.
50 results