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Benchmarking the next generation of homology inference tools.
Saripella GV, Sonnhammer EL, Forslund K. Saripella GV, et al. Among authors: forslund k. Bioinformatics. 2016 Sep 1;32(17):2636-41. doi: 10.1093/bioinformatics/btw305. Epub 2016 Jun 1. Bioinformatics. 2016. PMID: 27256311 Free PMC article.
Domain architecture conservation in orthologs.
Forslund K, Pekkari I, Sonnhammer EL. Forslund K, et al. BMC Bioinformatics. 2011 Aug 5;12:326. doi: 10.1186/1471-2105-12-326. BMC Bioinformatics. 2011. PMID: 21819573 Free PMC article.
Big data and other challenges in the quest for orthologs.
Sonnhammer EL, Gabaldón T, Sousa da Silva AW, Martin M, Robinson-Rechavi M, Boeckmann B, Thomas PD, Dessimoz C; Quest for Orthologs consortium. Sonnhammer EL, et al. Bioinformatics. 2014 Nov 1;30(21):2993-8. doi: 10.1093/bioinformatics/btu492. Epub 2014 Jul 26. Bioinformatics. 2014. PMID: 25064571 Free PMC article.
Predicting protein function from domain content.
Forslund K, Sonnhammer EL. Forslund K, et al. Bioinformatics. 2008 Aug 1;24(15):1681-7. doi: 10.1093/bioinformatics/btn312. Epub 2008 Jun 30. Bioinformatics. 2008. PMID: 18591194
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis.
Ostlund G, Schmitt T, Forslund K, Köstler T, Messina DN, Roopra S, Frings O, Sonnhammer EL. Ostlund G, et al. Among authors: forslund k. Nucleic Acids Res. 2010 Jan;38(Database issue):D196-203. doi: 10.1093/nar/gkp931. Epub 2009 Nov 5. Nucleic Acids Res. 2010. PMID: 19892828 Free PMC article.
Orthology confers intron position conservation.
Henricson A, Forslund K, Sonnhammer EL. Henricson A, et al. Among authors: forslund k. BMC Genomics. 2010 Jul 2;11:412. doi: 10.1186/1471-2164-11-412. BMC Genomics. 2010. PMID: 20598118 Free PMC article.
Evolution of protein domain architectures.
Forslund K, Sonnhammer EL. Forslund K, et al. Methods Mol Biol. 2012;856:187-216. doi: 10.1007/978-1-61779-585-5_8. Methods Mol Biol. 2012. PMID: 22399460 Review.
103 results