Friend SH - Search Results

1

Systematic analysis of challenge-driven improvements in molecular prognostic models for breast cancer.

Margolin AA, Bilal E, Huang E, Norman TC, Ottestad L, Mecham BH, Sauerwine B, Kellen MR, Mangravite LM, Furia MD, Vollan HK, Rueda OM, Guinney J, Deflaux NA, Hoff B, Schildwachter X, Russnes HG, Park D, Vang VO, Pirtle T, Youseff L, Citro C, Curtis C, Kristensen VN, Hellerstein J, Friend SH, Stolovitzky G, Aparicio S, Caldas C, Børresen-Dale AL. Margolin AA, et al. Among authors: friend sh. Sci Transl Med. 2013 Apr 17;5(181):181re1. doi: 10.1126/scitranslmed.3006112. Sci Transl Med. 2013. PMID: 23596205 Free PMC article.

2

Database of genomic biomarkers for cancer drugs and clinical targetability in solid tumors.

Dienstmann R, Jang IS, Bot B, Friend S, Guinney J. Dienstmann R, et al. Cancer Discov. 2015 Feb;5(2):118-23. doi: 10.1158/2159-8290.CD-14-1118. Cancer Discov. 2015. PMID: 25656898 Free PMC article.

3

The Prostate Cancer DREAM Challenge: A Community-Wide Effort to Use Open Clinical Trial Data for the Quantitative Prediction of Outcomes in Metastatic Prostate Cancer.

Abdallah K, Hugh-Jones C, Norman T, Friend S, Stolovitzky G. Abdallah K, et al. Oncologist. 2015 May;20(5):459-60. doi: 10.1634/theoncologist.2015-0054. Epub 2015 Mar 16. Oncologist. 2015. PMID: 25777346 Free PMC article.

4

Improving breast cancer survival analysis through competition-based multidimensional modeling.

Bilal E, Dutkowski J, Guinney J, Jang IS, Logsdon BA, Pandey G, Sauerwine BA, Shimoni Y, Moen Vollan HK, Mecham BH, Rueda OM, Tost J, Curtis C, Alvarez MJ, Kristensen VN, Aparicio S, Børresen-Dale AL, Caldas C, Califano A, Friend SH, Ideker T, Schadt EE, Stolovitzky GA, Margolin AA. Bilal E, et al. Among authors: friend sh. PLoS Comput Biol. 2013;9(5):e1003047. doi: 10.1371/journal.pcbi.1003047. Epub 2013 May 9. PLoS Comput Biol. 2013. PMID: 23671412 Free PMC article.

5

Systematic assessment of analytical methods for drug sensitivity prediction from cancer cell line data.

Jang IS, Neto EC, Guinney J, Friend SH, Margolin AA. Jang IS, et al. Among authors: friend sh. Pac Symp Biocomput. 2014:63-74. Pac Symp Biocomput. 2014. PMID: 24297534 Free PMC article.

6

Global optimization of somatic variant identification in cancer genomes with a global community challenge.

Boutros PC, Ewing AD, Ellrott K, Norman TC, Dang KK, Hu Y, Kellen MR, Suver C, Bare JC, Stein LD, Spellman PT, Stolovitzky G, Friend SH, Margolin AA, Stuart JM. Boutros PC, et al. Among authors: friend sh. Nat Genet. 2014 Apr;46(4):318-319. doi: 10.1038/ng.2932. Nat Genet. 2014. PMID: 24675517 Free PMC article. No abstract available.

7

Metcalfe's law and the biology information commons.

Friend SH, Norman TC. Friend SH, et al. Nat Biotechnol. 2013 Apr;31(4):297-303. doi: 10.1038/nbt.2555. Nat Biotechnol. 2013. PMID: 23563423 No abstract available.

8

Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas.

Omberg L, Ellrott K, Yuan Y, Kandoth C, Wong C, Kellen MR, Friend SH, Stuart J, Liang H, Margolin AA. Omberg L, et al. Among authors: friend sh. Nat Genet. 2013 Oct;45(10):1121-6. doi: 10.1038/ng.2761. Nat Genet. 2013. PMID: 24071850 Free PMC article.

9

Developing predictive molecular maps of human disease through community-based modeling.

Derry JM, Mangravite LM, Suver C, Furia MD, Henderson D, Schildwachter X, Bot B, Izant J, Sieberts SK, Kellen MR, Friend SH. Derry JM, et al. Among authors: friend sh. Nat Genet. 2012 Jan 27;44(2):127-30. doi: 10.1038/ng.1089. Nat Genet. 2012. PMID: 22281773 Free PMC article.

10

The Stream algorithm: computationally efficient ridge-regression via Bayesian model averaging, and applications to pharmacogenomic prediction of cancer cell line sensitivity.

Neto EC, Jang IS, Friend SH, Margolin AA. Neto EC, et al. Among authors: friend sh. Pac Symp Biocomput. 2014:27-38. Pac Symp Biocomput. 2014. PMID: 24297531 Free PMC article.

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