Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

Search Results

63 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Results By Year timeline is not available.
Page 1
A survey of best practices for RNA-seq data analysis.
Conesa A, Madrigal P, Tarazona S, Gomez-Cabrero D, Cervera A, McPherson A, Szcześniak MW, Gaffney DJ, Elo LL, Zhang X, Mortazavi A. Conesa A, et al. Among authors: gaffney dj. Genome Biol. 2016 Jan 26;17:13. doi: 10.1186/s13059-016-0881-8. Genome Biol. 2016. PMID: 26813401 Free PMC article. Review.
Erratum to: A survey of best practices for RNA-seq data analysis.
Conesa A, Madrigal P, Tarazona S, Gomez-Cabrero D, Cervera A, McPherson A, Szcześniak MW, Gaffney DJ, Elo LL, Zhang X, Mortazavi A. Conesa A, et al. Among authors: gaffney dj. Genome Biol. 2016 Aug 26;17(1):181. doi: 10.1186/s13059-016-1047-4. Genome Biol. 2016. PMID: 27565134 Free PMC article. No abstract available.
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression.
Cuomo ASE, Seaton DD, McCarthy DJ, Martinez I, Bonder MJ, Garcia-Bernardo J, Amatya S, Madrigal P, Isaacson A, Buettner F, Knights A, Natarajan KN; HipSci Consortium; Vallier L, Marioni JC, Chhatriwala M, Stegle O. Cuomo ASE, et al. Nat Commun. 2020 Feb 10;11(1):810. doi: 10.1038/s41467-020-14457-z. Nat Commun. 2020. PMID: 32041960 Free PMC article.
Publisher Correction: Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression.
Cuomo ASE, Seaton DD, McCarthy DJ, Martinez I, Bonder MJ, Garcia-Bernardo J, Amatya S, Madrigal P, Isaacson A, Buettner F, Knights A, Natarajan KN; HipSci Consortium; Vallier L, Marioni JC, Chhatriwala M, Stegle O. Cuomo ASE, et al. Nat Commun. 2020 Mar 23;11(1):1572. doi: 10.1038/s41467-020-15098-y. Nat Commun. 2020. PMID: 32251272 Free PMC article.
Fine-mapping cellular QTLs with RASQUAL and ATAC-seq.
Kumasaka N, Knights AJ, Gaffney DJ. Kumasaka N, et al. Among authors: gaffney dj. Nat Genet. 2016 Feb;48(2):206-13. doi: 10.1038/ng.3467. Epub 2015 Dec 14. Nat Genet. 2016. PMID: 26656845 Free PMC article.
Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation.
Jerber J, Seaton DD, Cuomo ASE, Kumasaka N, Haldane J, Steer J, Patel M, Pearce D, Andersson M, Bonder MJ, Mountjoy E, Ghoussaini M, Lancaster MA; HipSci Consortium; Marioni JC, Merkle FT, Gaffney DJ, Stegle O. Jerber J, et al. Among authors: gaffney dj. Nat Genet. 2021 Mar;53(3):304-312. doi: 10.1038/s41588-021-00801-6. Epub 2021 Mar 4. Nat Genet. 2021. PMID: 33664506 Free PMC article.
Dissecting the regulatory architecture of gene expression QTLs.
Gaffney DJ, Veyrieras JB, Degner JF, Pique-Regi R, Pai AA, Crawford GE, Stephens M, Gilad Y, Pritchard JK. Gaffney DJ, et al. Genome Biol. 2012 Jan 31;13(1):R7. doi: 10.1186/gb-2012-13-1-r7. Genome Biol. 2012. PMID: 22293038 Free PMC article.
63 results