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Renewing Felsenstein's phylogenetic bootstrap in the era of big data.
Lemoine F, Domelevo Entfellner JB, Wilkinson E, Correia D, Dávila Felipe M, De Oliveira T, Gascuel O. Lemoine F, et al. Among authors: gascuel o. Nature. 2018 Apr;556(7702):452-456. doi: 10.1038/s41586-018-0043-0. Epub 2018 Apr 18. Nature. 2018. PMID: 29670290 Free PMC article.
Searching for virus phylotypes.
Chevenet F, Jung M, Peeters M, de Oliveira T, Gascuel O. Chevenet F, et al. Among authors: gascuel o. Bioinformatics. 2013 Mar 1;29(5):561-70. doi: 10.1093/bioinformatics/btt010. Epub 2013 Jan 17. Bioinformatics. 2013. PMID: 23329414 Free PMC article.
NGPhylogeny.fr: new generation phylogenetic services for non-specialists.
Lemoine F, Correia D, Lefort V, Doppelt-Azeroual O, Mareuil F, Cohen-Boulakia S, Gascuel O. Lemoine F, et al. Among authors: gascuel o. Nucleic Acids Res. 2019 Jul 2;47(W1):W260-W265. doi: 10.1093/nar/gkz303. Nucleic Acids Res. 2019. PMID: 31028399 Free PMC article.
Distribution and asymptotic behavior of the phylogenetic transfer distance.
Dávila Felipe M, Domelevo Entfellner JB, Lemoine F, Truszkowski J, Gascuel O. Dávila Felipe M, et al. Among authors: gascuel o. J Math Biol. 2019 Jul;79(2):485-508. doi: 10.1007/s00285-019-01365-0. Epub 2019 Apr 29. J Math Biol. 2019. PMID: 31037350 Free PMC article.
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable.
Mavian C, Pond SK, Marini S, Magalis BR, Vandamme AM, Dellicour S, Scarpino SV, Houldcroft C, Villabona-Arenas J, Paisie TK, Trovão NS, Boucher C, Zhang Y, Scheuermann RH, Gascuel O, Lam TT, Suchard MA, Abecasis A, Wilkinson E, de Oliveira T, Bento AI, Schmidt HA, Martin D, Hadfield J, Faria N, Grubaugh ND, Neher RA, Baele G, Lemey P, Stadler T, Albert J, Crandall KA, Leitner T, Stamatakis A, Prosperi M, Salemi M. Mavian C, et al. Among authors: gascuel o. Proc Natl Acad Sci U S A. 2020 Jun 9;117(23):12522-12523. doi: 10.1073/pnas.2007295117. Epub 2020 May 7. Proc Natl Acad Sci U S A. 2020. PMID: 32381734 Free PMC article. No abstract available.
Origin, evolution and global spread of SARS-CoV-2.
Zhukova A, Blassel L, Lemoine F, Morel M, Voznica J, Gascuel O. Zhukova A, et al. Among authors: gascuel o. C R Biol. 2020 Nov 24. doi: 10.5802/crbiol.29. Online ahead of print. C R Biol. 2020. PMID: 33274614 Free article. Review.
Cuban history of CRF19 recombinant subtype of HIV-1.
Zhukova A, Voznica J, Dávila Felipe M, To TH, Pérez L, Martínez Y, Pintos Y, Méndez M, Gascuel O, Kouri V. Zhukova A, et al. Among authors: gascuel o. PLoS Pathog. 2021 Aug 9;17(8):e1009786. doi: 10.1371/journal.ppat.1009786. eCollection 2021 Aug. PLoS Pathog. 2021. PMID: 34370795 Free PMC article.
115 results