Gerstein M - Search Results

1

Global identification and characterization of transcriptionally active regions in the rice genome.

Li L, Wang X, Sasidharan R, Stolc V, Deng W, He H, Korbel J, Chen X, Tongprasit W, Ronald P, Chen R, Gerstein M, Deng XW. Li L, et al. Among authors: gerstein m. PLoS One. 2007 Mar 14;2(3):e294. doi: 10.1371/journal.pone.0000294. PLoS One. 2007. PMID: 17372628 Free PMC article.

2

A genome-wide analysis of blue-light regulation of Arabidopsis transcription factor gene expression during seedling development.

Jiao Y, Yang H, Ma L, Sun N, Yu H, Liu T, Gao Y, Gu H, Chen Z, Wada M, Gerstein M, Zhao H, Qu LJ, Deng XW. Jiao Y, et al. Among authors: gerstein m. Plant Physiol. 2003 Dec;133(4):1480-93. doi: 10.1104/pp.103.029439. Epub 2003 Nov 6. Plant Physiol. 2003. PMID: 14605227 Free PMC article.

3

Identification of novel functional elements in the human genome.

Lian Z, Euskirchen G, Rinn J, Martone R, Bertone P, Hartman S, Royce T, Nelson K, Sayward F, Luscombe N, Yang J, Li JL, Miller P, Urban AE, Gerstein M, Weissman S, Snyder M. Lian Z, et al. Among authors: gerstein m. Cold Spring Harb Symp Quant Biol. 2003;68:317-22. doi: 10.1101/sqb.2003.68.317. Cold Spring Harb Symp Quant Biol. 2003. PMID: 15338632 No abstract available.

4

Global identification of human transcribed sequences with genome tiling arrays.

Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, Rinn JL, Tongprasit W, Samanta M, Weissman S, Gerstein M, Snyder M. Bertone P, et al. Among authors: gerstein m. Science. 2004 Dec 24;306(5705):2242-6. doi: 10.1126/science.1103388. Epub 2004 Nov 11. Science. 2004. PMID: 15539566

5

DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states.

White EJ, Emanuelsson O, Scalzo D, Royce T, Kosak S, Oakeley EJ, Weissman S, Gerstein M, Groudine M, Snyder M, Schübeler D. White EJ, et al. Among authors: gerstein m. Proc Natl Acad Sci U S A. 2004 Dec 21;101(51):17771-6. doi: 10.1073/pnas.0408170101. Epub 2004 Dec 10. Proc Natl Acad Sci U S A. 2004. PMID: 15591350 Free PMC article.

6

Applications of DNA tiling arrays to experimental genome annotation and regulatory pathway discovery.

Bertone P, Gerstein M, Snyder M. Bertone P, et al. Among authors: gerstein m. Chromosome Res. 2005;13(3):259-74. doi: 10.1007/s10577-005-2165-0. Chromosome Res. 2005. PMID: 15868420 Review.

7

Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.

Royce TE, Rozowsky JS, Bertone P, Samanta M, Stolc V, Weissman S, Snyder M, Gerstein M. Royce TE, et al. Among authors: gerstein m. Trends Genet. 2005 Aug;21(8):466-75. doi: 10.1016/j.tig.2005.06.007. Trends Genet. 2005. PMID: 15979196 Free PMC article. Review.

8

A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray.

Stolc V, Li L, Wang X, Li X, Su N, Tongprasit W, Han B, Xue Y, Li J, Snyder M, Gerstein M, Wang J, Deng XW. Stolc V, et al. Among authors: gerstein m. Plant Mol Biol. 2005 Sep;59(1):137-49. doi: 10.1007/s11103-005-6164-5. Plant Mol Biol. 2005. PMID: 16217608

9

High-resolution mapping of DNA copy alterations in human chromosome 22 using high-density tiling oligonucleotide arrays.

Urban AE, Korbel JO, Selzer R, Richmond T, Hacker A, Popescu GV, Cubells JF, Green R, Emanuel BS, Gerstein MB, Weissman SM, Snyder M. Urban AE, et al. Among authors: gerstein mb. Proc Natl Acad Sci U S A. 2006 Mar 21;103(12):4534-9. doi: 10.1073/pnas.0511340103. Epub 2006 Mar 14. Proc Natl Acad Sci U S A. 2006. PMID: 16537408 Free PMC article.

10

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.

Du J, Rozowsky JS, Korbel JO, Zhang ZD, Royce TE, Schultz MH, Snyder M, Gerstein M. Du J, et al. Among authors: gerstein m. Bioinformatics. 2006 Dec 15;22(24):3016-24. doi: 10.1093/bioinformatics/btl515. Epub 2006 Oct 12. Bioinformatics. 2006. PMID: 17038339

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