Gerstein MB - Search Results

1

Clark MB, Amaral PP, Schlesinger FJ, Dinger ME, Taft RJ, Rinn JL, Ponting CP, Stadler PF, Morris KV, Morillon A, Rozowsky JS, Gerstein MB, Wahlestedt C, Hayashizaki Y, Carninci P, Gingeras TR, Mattick JS. Clark MB, et al. Among authors: gerstein mb. PLoS Biol. 2011 Jul;9(7):e1000625; discussion e1001102. doi: 10.1371/journal.pbio.1000625. Epub 2011 Jul 12. PLoS Biol. 2011. PMID: 21765801 Free PMC article.

2

The transcriptional activity of human Chromosome 22.

Rinn JL, Euskirchen G, Bertone P, Martone R, Luscombe NM, Hartman S, Harrison PM, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M. Rinn JL, et al. Genes Dev. 2003 Feb 15;17(4):529-40. doi: 10.1101/gad.1055203. Genes Dev. 2003. PMID: 12600945 Free PMC article.

3

Distribution of NF-kappaB-binding sites across human chromosome 22.

Martone R, Euskirchen G, Bertone P, Hartman S, Royce TE, Luscombe NM, Rinn JL, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M. Martone R, et al. Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12247-52. doi: 10.1073/pnas.2135255100. Epub 2003 Oct 3. Proc Natl Acad Sci U S A. 2003. PMID: 14527995 Free PMC article.

4

Major molecular differences between mammalian sexes are involved in drug metabolism and renal function.

Rinn JL, Rozowsky JS, Laurenzi IJ, Petersen PH, Zou K, Zhong W, Gerstein M, Snyder M. Rinn JL, et al. Dev Cell. 2004 Jun;6(6):791-800. doi: 10.1016/j.devcel.2004.05.005. Dev Cell. 2004. PMID: 15177028 Free article.

5

Global identification of human transcribed sequences with genome tiling arrays.

Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, Rinn JL, Tongprasit W, Samanta M, Weissman S, Gerstein M, Snyder M. Bertone P, et al. Science. 2004 Dec 24;306(5705):2242-6. doi: 10.1126/science.1103388. Epub 2004 Nov 11. Science. 2004. PMID: 15539566

6

Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.

Royce TE, Rozowsky JS, Bertone P, Samanta M, Stolc V, Weissman S, Snyder M, Gerstein M. Royce TE, et al. Trends Genet. 2005 Aug;21(8):466-75. doi: 10.1016/j.tig.2005.06.007. Trends Genet. 2005. PMID: 15979196 Free PMC article. Review.

7

Design optimization methods for genomic DNA tiling arrays.

Bertone P, Trifonov V, Rozowsky JS, Schubert F, Emanuelsson O, Karro J, Kao MY, Snyder M, Gerstein M. Bertone P, et al. Genome Res. 2006 Feb;16(2):271-81. doi: 10.1101/gr.4452906. Epub 2005 Dec 19. Genome Res. 2006. PMID: 16365382 Free PMC article.

8

Extrapolating traditional DNA microarray statistics to tiling and protein microarray technologies.

Royce TE, Rozowsky JS, Luscombe NM, Emanuelsson O, Yu H, Zhu X, Snyder M, Gerstein MB. Royce TE, et al. Among authors: gerstein mb. Methods Enzymol. 2006;411:282-311. doi: 10.1016/S0076-6879(06)11015-0. Methods Enzymol. 2006. PMID: 16939796 Review.

9

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.

Du J, Rozowsky JS, Korbel JO, Zhang ZD, Royce TE, Schultz MH, Snyder M, Gerstein M. Du J, et al. Bioinformatics. 2006 Dec 15;22(24):3016-24. doi: 10.1093/bioinformatics/btl515. Epub 2006 Oct 12. Bioinformatics. 2006. PMID: 17038339

10

Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome.

Emanuelsson O, Nagalakshmi U, Zheng D, Rozowsky JS, Urban AE, Du J, Lian Z, Stolc V, Weissman S, Snyder M, Gerstein MB. Emanuelsson O, et al. Among authors: gerstein mb. Genome Res. 2007 Jun;17(6):886-97. doi: 10.1101/gr.5014606. Epub 2006 Nov 21. Genome Res. 2007. PMID: 17119069 Free PMC article.

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