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Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.
Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK; Nasonia Genome Working Group; Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van de Zande L, Worley KC, Zdobnov EM, Aerts M, Albert S, Anaya VH, Anzola JM, Barchuk AR, Behura SK, Bera AN, Berenbaum MR, Bertossa RC, Bitondi MM, Bordenstein SR, Bork P, Bornberg-Bauer E, Brunain M, Cazzamali G, Chaboub L, Chacko J, Chavez D, Childers CP, Choi JH, Clark ME, Claudianos C, Clinton RA, Cree AG, Cristino AS, Dang PM, Darby AC, de Graaf DC, Devreese B, Dinh HH, Edwards R, Elango N, Elhaik E, Ermolaeva O, Evans JD, Foret S, Fowler GR, Gerlach D, Gibson JD, Gilbert DG, Graur D, Gründer S, Hagen DE, Han Y, Hauser F, Hultmark D, Hunter HC 4th, Hurst GD, Jhangian SN, Jiang H, Johnson RM, Jones AK, Junier T, Kadowaki T, Kamping A, Kapustin Y, Kechavarzi B, Kim J, Kim J, Kiryutin B, Koevoets T, Kovar CL, Kriventseva EV, Kucharski R, Lee H, Lee SL, Lees K, Lewis LR, Loehlin DW, Logsdon JM Jr, Lopez JA, Lozado RJ, Maglott D, Maleszka R, Mayampurath A, Mazur DJ, McClure MA, Moore AD, Morgan … See abstract for full author list ➔ Werren JH, et al. Among authors: gilbert dg. Science. 2010 Jan 15;327(5963):343-8. doi: 10.1126/science.1178028. Science. 2010. PMID: 20075255 Free PMC article.
OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis.
Rago A, Gilbert DG, Choi JH, Sackton TB, Wang X, Kelkar YD, Werren JH, Colbourne JK. Rago A, et al. Among authors: gilbert dg. BMC Genomics. 2016 Aug 25;17(1):678. doi: 10.1186/s12864-016-2886-9. BMC Genomics. 2016. PMID: 27561358 Free PMC article.
The ecoresponsive genome of Daphnia pulex.
Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL. Colbourne JK, et al. Science. 2011 Feb 4;331(6017):555-61. doi: 10.1126/science.1197761. Science. 2011. PMID: 21292972 Free PMC article.
wFleaBase: the Daphnia genome database.
Colbourne JK, Singan VR, Gilbert DG. Colbourne JK, et al. Among authors: gilbert dg. BMC Bioinformatics. 2005 Mar 7;6:45. doi: 10.1186/1471-2105-6-45. BMC Bioinformatics. 2005. PMID: 15752432 Free PMC article.
The landscape of extreme genomic variation in the highly adaptable Atlantic killifish.
Reid NM, Jackson CE, Gilbert D, Minx P, Montague MJ, Hampton TH, Helfrich LW, King BL, Nacci DE, Aluru N, Karchner SI, Colbourne JK, Hahn ME, Shaw JR, Oleksiak MF, Crawford DL, Warren WC, Whitehead A. Reid NM, et al. Genome Biol Evol. 2017 Mar;9(3):659-676. doi: 10.1093/gbe/evx023. Epub 2017 Feb 13. Genome Biol Evol. 2017. PMID: 28201664 Free PMC article.
Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes.
Orsini L, Brown JB, Shams Solari O, Li D, He S, Podicheti R, Stoiber MH, Spanier KI, Gilbert D, Jansen M, Rusch DB, Pfrender ME, Colbourne JK, Frilander MJ, Kvist J, Decaestecker E, De Schamphelaere KAC, De Meester L. Orsini L, et al. Mol Ecol. 2018 Feb;27(4):886-897. doi: 10.1111/mec.14261. Epub 2017 Aug 19. Mol Ecol. 2018. PMID: 28746735 Free PMC article.
Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.
Orsini L, Gilbert D, Podicheti R, Jansen M, Brown JB, Solari OS, Spanier KI, Colbourne JK, Rusch DB, Decaestecker E, Asselman J, De Schamphelaere KA, Ebert D, Haag CR, Kvist J, Laforsch C, Petrusek A, Beckerman AP, Little TJ, Chaturvedi A, Pfrender ME, De Meester L, Frilander MJ. Orsini L, et al. Sci Data. 2016 May 10;3:160030. doi: 10.1038/sdata.2016.30. Sci Data. 2016. PMID: 27164179 Free PMC article.
96 results