Girolami M - Search Results

1

Clinical proteomics: A need to define the field and to begin to set adequate standards.

Mischak H, Apweiler R, Banks RE, Conaway M, Coon J, Dominiczak A, Ehrich JH, Fliser D, Girolami M, Hermjakob H, Hochstrasser D, Jankowski J, Julian BA, Kolch W, Massy ZA, Neusuess C, Novak J, Peter K, Rossing K, Schanstra J, Semmes OJ, Theodorescu D, Thongboonkerd V, Weissinger EM, Van Eyk JE, Yamamoto T. Mischak H, et al. Among authors: girolami m. Proteomics Clin Appl. 2007 Feb;1(2):148-56. doi: 10.1002/prca.200600771. Epub 2007 Jan 22. Proteomics Clin Appl. 2007. PMID: 21136664

2

Recommendations for biomarker identification and qualification in clinical proteomics.

Mischak H, Allmaier G, Apweiler R, Attwood T, Baumann M, Benigni A, Bennett SE, Bischoff R, Bongcam-Rudloff E, Capasso G, Coon JJ, D'Haese P, Dominiczak AF, Dakna M, Dihazi H, Ehrich JH, Fernandez-Llama P, Fliser D, Frokiaer J, Garin J, Girolami M, Hancock WS, Haubitz M, Hochstrasser D, Holman RR, Ioannidis JP, Jankowski J, Julian BA, Klein JB, Kolch W, Luider T, Massy Z, Mattes WB, Molina F, Monsarrat B, Novak J, Peter K, Rossing P, Sánchez-Carbayo M, Schanstra JP, Semmes OJ, Spasovski G, Theodorescu D, Thongboonkerd V, Vanholder R, Veenstra TD, Weissinger E, Yamamoto T, Vlahou A. Mischak H, et al. Among authors: girolami m. Sci Transl Med. 2010 Aug 25;2(46):46ps42. doi: 10.1126/scitranslmed.3001249. Sci Transl Med. 2010. PMID: 20739680

3

Addressing the challenge of defining valid proteomic biomarkers and classifiers.

Dakna M, Harris K, Kalousis A, Carpentier S, Kolch W, Schanstra JP, Haubitz M, Vlahou A, Mischak H, Girolami M. Dakna M, et al. Among authors: girolami m. BMC Bioinformatics. 2010 Dec 10;11:594. doi: 10.1186/1471-2105-11-594. BMC Bioinformatics. 2010. PMID: 21208396 Free PMC article.

4

Analysis of complex, multidimensional datasets.

Girolami M, Mischak H, Krebs R. Girolami M, et al. Drug Discov Today Technol. 2006 Spring;3(1):13-9. doi: 10.1016/j.ddtec.2006.03.010. Drug Discov Today Technol. 2006. PMID: 24980097

5

Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models.

Rogers S, Girolami M, Kolch W, Waters KM, Liu T, Thrall B, Wiley HS. Rogers S, et al. Among authors: girolami m. Bioinformatics. 2008 Dec 15;24(24):2894-900. doi: 10.1093/bioinformatics/btn553. Epub 2008 Oct 30. Bioinformatics. 2008. PMID: 18974169 Free PMC article.

6

Predictive response-relevant clustering of expression data provides insights into disease processes.

Hopcroft LE, McBride MW, Harris KJ, Sampson AK, McClure JD, Graham D, Young G, Holyoake TL, Girolami MA, Dominiczak AF. Hopcroft LE, et al. Among authors: girolami ma. Nucleic Acids Res. 2010 Nov;38(20):6831-40. doi: 10.1093/nar/gkq550. Epub 2010 Jun 22. Nucleic Acids Res. 2010. PMID: 20571087 Free PMC article.

7

Inferring signaling pathway topologies from multiple perturbation measurements of specific biochemical species.

Xu TR, Vyshemirsky V, Gormand A, von Kriegsheim A, Girolami M, Baillie GS, Ketley D, Dunlop AJ, Milligan G, Houslay MD, Kolch W. Xu TR, et al. Among authors: girolami m. Sci Signal. 2010 Mar 16;3(113):ra20. doi: 10.1126/scisignal.2000517. Sci Signal. 2010. PMID: 20234003 Corrected and republished.

8

Inferring signaling pathway topologies from multiple perturbation measurements of specific biochemical species.

Xu TR, Vyshemirsky V, Gormand A, von Kriegsheim A, Girolami M, Baillie GS, Ketley D, Dunlop AJ, Milligan G, Houslay MD, Kolch W. Xu TR, et al. Among authors: girolami m. Sci Signal. 2010;3(134):ra20. Sci Signal. 2010. PMID: 20731071

9

A Bayesian regression approach to the inference of regulatory networks from gene expression data.

Rogers S, Girolami M. Rogers S, et al. Among authors: girolami m. Bioinformatics. 2005 Jul 15;21(14):3131-7. doi: 10.1093/bioinformatics/bti487. Epub 2005 May 6. Bioinformatics. 2005. PMID: 15879452

10

Probabilistic assignment of formulas to mass peaks in metabolomics experiments.

Rogers S, Scheltema RA, Girolami M, Breitling R. Rogers S, et al. Among authors: girolami m. Bioinformatics. 2009 Feb 15;25(4):512-8. doi: 10.1093/bioinformatics/btn642. Epub 2008 Dec 18. Bioinformatics. 2009. PMID: 19095699

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