Grant GR - Search Results

1

IVT-seq reveals extreme bias in RNA sequencing.

Lahens NF, Kavakli IH, Zhang R, Hayer K, Black MB, Dueck H, Pizarro A, Kim J, Irizarry R, Thomas RS, Grant GR, Hogenesch JB. Lahens NF, et al. Among authors: grant gr. Genome Biol. 2014 Jun 30;15(6):R86. doi: 10.1186/gb-2014-15-6-r86. Genome Biol. 2014. PMID: 24981968 Free PMC article.

2

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

Grant GR, Farkas MH, Pizarro AD, Lahens NF, Schug J, Brunk BP, Stoeckert CJ, Hogenesch JB, Pierce EA. Grant GR, et al. Bioinformatics. 2011 Sep 15;27(18):2518-28. doi: 10.1093/bioinformatics/btr427. Epub 2011 Jul 19. Bioinformatics. 2011. PMID: 21775302 Free PMC article.

3

Detection theory in identification of RNA-DNA sequence differences using RNA-sequencing.

Toung JM, Lahens N, Hogenesch JB, Grant G. Toung JM, et al. PLoS One. 2014 Nov 14;9(11):e112040. doi: 10.1371/journal.pone.0112040. eCollection 2014. PLoS One. 2014. PMID: 25396741 Free PMC article.

4

Considerations for RNA-seq analysis of circadian rhythms.

Li J, Grant GR, Hogenesch JB, Hughes ME. Li J, et al. Among authors: grant gr. Methods Enzymol. 2015;551:349-67. doi: 10.1016/bs.mie.2014.10.020. Epub 2014 Dec 26. Methods Enzymol. 2015. PMID: 25662464

5

Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data.

Hayer KE, Pizarro A, Lahens NF, Hogenesch JB, Grant GR. Hayer KE, et al. Among authors: grant gr. Bioinformatics. 2015 Dec 15;31(24):3938-45. doi: 10.1093/bioinformatics/btv488. Epub 2015 Sep 3. Bioinformatics. 2015. PMID: 26338770 Free PMC article.

6

Simulation-based comprehensive benchmarking of RNA-seq aligners.

Baruzzo G, Hayer KE, Kim EJ, Di Camillo B, FitzGerald GA, Grant GR. Baruzzo G, et al. Among authors: grant gr. Nat Methods. 2017 Feb;14(2):135-139. doi: 10.1038/nmeth.4106. Epub 2016 Dec 12. Nat Methods. 2017. PMID: 27941783 Free PMC article.

7

A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression.

Lahens NF, Ricciotti E, Smirnova O, Toorens E, Kim EJ, Baruzzo G, Hayer KE, Ganguly T, Schug J, Grant GR. Lahens NF, et al. Among authors: grant gr. BMC Genomics. 2017 Aug 10;18(1):602. doi: 10.1186/s12864-017-4011-0. BMC Genomics. 2017. PMID: 28797240 Free PMC article.

8

Outlier detection for improved differential splicing quantification from RNA-Seq experiments with replicates.

Norton SS, Vaquero-Garcia J, Lahens NF, Grant GR, Barash Y. Norton SS, et al. Among authors: grant gr. Bioinformatics. 2018 May 1;34(9):1488-1497. doi: 10.1093/bioinformatics/btx790. Bioinformatics. 2018. PMID: 29236961 Free PMC article.

9

Transgenerational inheritance of chronic adolescent stress: Effects of stress response and the amygdala transcriptome.

Manners MT, Yohn NL, Lahens NF, Grant GR, Bartolomei MS, Blendy JA. Manners MT, et al. Among authors: grant gr. Genes Brain Behav. 2019 Sep;18(7):e12493. doi: 10.1111/gbb.12493. Epub 2018 Jul 4. Genes Brain Behav. 2019. PMID: 29896789 Free PMC article.

10

Comparative evaluation of RNA-Seq library preparation methods for strand-specificity and low input.

Sarantopoulou D, Tang SY, Ricciotti E, Lahens NF, Lekkas D, Schug J, Guo XS, Paschos GK, FitzGerald GA, Pack AI, Grant GR. Sarantopoulou D, et al. Among authors: grant gr. Sci Rep. 2019 Sep 17;9(1):13477. doi: 10.1038/s41598-019-49889-1. Sci Rep. 2019. PMID: 31530843 Free PMC article.

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