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Rule-based modeling and simulations of the inner kinetochore structure.
Prog Biophys Mol Biol. 2013 Sep;113(1):33-45. doi: 10.1016/j.pbiomolbio.2013.03.010. Epub 2013 Apr 2.
Prog Biophys Mol Biol. 2013.
PMID: 23562479
Rule-based spatial modeling with diffusing, geometrically constrained molecules.
Gruenert G, Ibrahim B, Lenser T, Lohel M, Hinze T, Dittrich P.
Gruenert G, et al.
BMC Bioinformatics. 2010 Jun 7;11:307. doi: 10.1186/1471-2105-11-307.
BMC Bioinformatics. 2010.
PMID: 20529264
Free PMC article.
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Spatial rule-based modeling: a method and its application to the human mitotic kinetochore.
Ibrahim B, Henze R, Gruenert G, Egbert M, Huwald J, Dittrich P.
Ibrahim B, et al. Among authors: gruenert g.
Cells. 2013 Jul 2;2(3):506-44. doi: 10.3390/cells2030506.
Cells. 2013.
PMID: 24709796
Free PMC article.
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Understanding Networks of Computing Chemical Droplet Neurons Based on Information Flow.
Gruenert G, Gizynski K, Escuela G, Ibrahim B, Gorecki J, Dittrich P.
Gruenert G, et al.
Int J Neural Syst. 2015 Nov;25(7):1450032. doi: 10.1142/S0129065714500324. Epub 2014 Dec 4.
Int J Neural Syst. 2015.
PMID: 25476910
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Combining evolution and self-organization to find natural Boolean representations in unconventional computational media.
Egbert MD, Gruenert G, Ibrahim B, Dittrich P.
Egbert MD, et al. Among authors: gruenert g.
Biosystems. 2019 Oct;184:104011. doi: 10.1016/j.biosystems.2019.104011. Epub 2019 Jul 29.
Biosystems. 2019.
PMID: 31369835
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Evolutionary Design of Classifiers Made of Droplets Containing a Nonlinear Chemical Medium.
Gizynski K, Gruenert G, Dittrich P, Gorecki J.
Gizynski K, et al. Among authors: gruenert g.
Evol Comput. 2017 Winter;25(4):643-671. doi: 10.1162/EVCO_a_00197. Epub 2016 Oct 11.
Evol Comput. 2017.
PMID: 27728772
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Chemical computing with reaction-diffusion processes.
Gorecki J, Gizynski K, Guzowski J, Gorecka JN, Garstecki P, Gruenert G, Dittrich P.
Gorecki J, et al. Among authors: gruenert g.
Philos Trans A Math Phys Eng Sci. 2015 Jul 28;373(2046):20140219. doi: 10.1098/rsta.2014.0219.
Philos Trans A Math Phys Eng Sci. 2015.
PMID: 26078345
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Chromosome positioning and the clustering of functionally related loci in yeast is driven by chromosomal interactions.
Gehlen LR, Gruenert G, Jones MB, Rodley CD, Langowski J, O'Sullivan JM.
Gehlen LR, et al. Among authors: gruenert g.
Nucleus. 2012 Jul 1;3(4):370-83. doi: 10.4161/nucl.20971. Epub 2012 Jun 12.
Nucleus. 2012.
PMID: 22688649
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