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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. Guindon S, et al. Syst Biol. 2010 May;59(3):307-21. doi: 10.1093/sysbio/syq010. Epub 2010 Mar 29. Syst Biol. 2010. PMID: 20525638 Free article.
Early PhyML versions used a fast algorithm performing nearest neighbor interchanges to improve a reasonable starting tree topology. Since the original publication (Guindon S., Gascuel O. 2003. A simple, fast and accurate algorithm to estimate large phylogenies by ma …
Early PhyML versions used a fast algorithm performing nearest neighbor interchanges to improve a reasonable starting tree topology. Since th …
Accounting for ambiguity in ancestral sequence reconstruction.
Oliva A, Pulicani S, Lefort V, Bréhélin L, Gascuel O, Guindon S. Oliva A, et al. Among authors: guindon s. Bioinformatics. 2019 Nov 1;35(21):4290-4297. doi: 10.1093/bioinformatics/btz249. Bioinformatics. 2019. PMID: 30977781
Phylogeny.fr: robust phylogenetic analysis for the non-specialist.
Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O. Dereeper A, et al. Among authors: guindon s. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. doi: 10.1093/nar/gkn180. Epub 2008 Apr 19. Nucleic Acids Res. 2008. PMID: 18424797 Free PMC article.
Genomics, biogeography, and the diversification of placental mammals.
Wildman DE, Uddin M, Opazo JC, Liu G, Lefort V, Guindon S, Gascuel O, Grossman LI, Romero R, Goodman M. Wildman DE, et al. Among authors: guindon s. Proc Natl Acad Sci U S A. 2007 Sep 4;104(36):14395-400. doi: 10.1073/pnas.0704342104. Epub 2007 Aug 29. Proc Natl Acad Sci U S A. 2007. PMID: 17728403 Free PMC article.
301 results