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A draft sequence of the rice genome (Oryza sativa L. ssp. indica).
Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, Cao M, Liu J, Sun J, Tang J, Chen Y, Huang X, Lin W, Ye C, Tong W, Cong L, Geng J, Han Y, Li L, Li W, Hu G, Huang X, Li W, Li J, Liu Z, Li L, Liu J, Qi Q, Liu J, Li L, Li T, Wang X, Lu H, Wu T, Zhu M, Ni P, Han H, Dong W, Ren X, Feng X, Cui P, Li X, Wang H, Xu X, Zhai W, Xu Z, Zhang J, He S, Zhang J, Xu J, Zhang K, Zheng X, Dong J, Zeng W, Tao L, Ye J, Tan J, Ren X, Chen X, He J, Liu D, Tian W, Tian C, Xia H, Bao Q, Li G, Gao H, Cao T, Wang J, Zhao W, Li P, Chen W, Wang X, Zhang Y, Hu J, Wang J, Liu S, Yang J, Zhang G, Xiong Y, Li Z, Mao L, Zhou C, Zhu Z, Chen R, Hao B, Zheng W, Chen S, Guo W, Li G, Liu S, Tao M, Wang J, Zhu L, Yuan L, Yang H. Yu J, et al. Among authors: han y, han h. Science. 2002 Apr 5;296(5565):79-92. doi: 10.1126/science.1068037. Science. 2002. PMID: 11935017
RePS: a sequence assembler that masks exact repeats identified from the shotgun data.
Wang J, Wong GK, Ni P, Han Y, Huang X, Zhang J, Ye C, Zhang Y, Hu J, Zhang K, Xu X, Cong L, Lu H, Ren X, Ren X, He J, Tao L, Passey DA, Wang J, Yang H, Yu J, Li S. Wang J, et al. Among authors: han y. Genome Res. 2002 May;12(5):824-31. doi: 10.1101/gr.165102. Genome Res. 2002. PMID: 11997349 Free PMC article.
The Genomes of Oryza sativa: a history of duplications.
Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S, Zeng C, Zhang J, Zhang Y, Li R, Xu Z, Li S, Li X, Zheng H, Cong L, Lin L, Yin J, Geng J, Li G, Shi J, Liu J, Lv H, Li J, Wang J, Deng Y, Ran L, Shi X, Wang X, Wu Q, Li C, Ren X, Wang J, Wang X, Li D, Liu D, Zhang X, Ji Z, Zhao W, Sun Y, Zhang Z, Bao J, Han Y, Dong L, Ji J, Chen P, Wu S, Liu J, Xiao Y, Bu D, Tan J, Yang L, Ye C, Zhang J, Xu J, Zhou Y, Yu Y, Zhang B, Zhuang S, Wei H, Liu B, Lei M, Yu H, Li Y, Xu H, Wei S, He X, Fang L, Zhang Z, Zhang Y, Huang X, Su Z, Tong W, Li J, Tong Z, Li S, Ye J, Wang L, Fang L, Lei T, Chen C, Chen H, Xu Z, Li H, Huang H, Zhang F, Xu H, Li N, Zhao C, Li S, Dong L, Huang Y, Li L, Xi Y, Qi Q, Li W, Zhang B, Hu W, Zhang Y, Tian X, Jiao Y, Liang X, Jin J, Gao L, Zheng W, Hao B, Liu S, Wang W, Yuan L, Cao M, McDermott J, Samudrala R, Wang J, Wong GK, Yang H. Yu J, et al. Among authors: han y. PLoS Biol. 2005 Feb;3(2):e38. doi: 10.1371/journal.pbio.0030038. Epub 2005 Feb 1. PLoS Biol. 2005. PMID: 15685292 Free PMC article.
Evolution and variation of the SARS-CoV genome.
Hu J, Wang J, Xu J, Li W, Han Y, Li Y, Ji J, Ye J, Xu Z, Zhang Z, Wei W, Li S, Wang J, Wang J, Yu J, Yang H. Hu J, et al. Among authors: han y. Genomics Proteomics Bioinformatics. 2003 Aug;1(3):216-25. doi: 10.1016/s1672-0229(03)01027-1. Genomics Proteomics Bioinformatics. 2003. PMID: 15629034 Free PMC article.
Genome organization of the SARS-CoV.
Xu J, Hu J, Wang J, Han Y, Hu Y, Wen J, Li Y, Ji J, Ye J, Zhang Z, Wei W, Li S, Wang J, Wang J, Yu J, Yang H. Xu J, et al. Among authors: han y. Genomics Proteomics Bioinformatics. 2003 Aug;1(3):226-35. doi: 10.1016/s1672-0229(03)01028-3. Genomics Proteomics Bioinformatics. 2003. PMID: 15629035 Free PMC article.
A genome sequence of novel SARS-CoV isolates: the genotype, GD-Ins29, leads to a hypothesis of viral transmission in South China.
Qin E, He X, Tian W, Liu Y, Li W, Wen J, Wang J, Fan B, Wu Q, Chang G, Cao W, Xu Z, Yang R, Wang J, Yu M, Li Y, Xu J, Si B, Hu Y, Peng W, Tang L, Jiang T, Shi J, Ji J, Zhang Y, Ye J, Wang C, Han Y, Zhou J, Deng Y, Li X, Hu J, Wang C, Yan C, Zhang Q, Bao J, Li G, Chen W, Fang L, Li C, Lei M, Li D, Tong W, Tian X, Wang J, Zhang B, Zhang H, Zhang Y, Zhao H, Zhang X, Li S, Cheng X, Zhang X, Liu B, Zeng C, Li S, Tan X, Liu S, Dong W, Wang J, Wong GK, Yu J, Wang J, Zhu Q, Yang H. Qin E, et al. Among authors: han y. Genomics Proteomics Bioinformatics. 2003 May;1(2):101-7. doi: 10.1016/s1672-0229(03)01014-3. Genomics Proteomics Bioinformatics. 2003. PMID: 15626340 Free PMC article.
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