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Evaluation of FluSight influenza forecasting in the 2021-22 and 2022-23 seasons with a new target laboratory-confirmed influenza hospitalizations.
Mathis SM, Webber AE, León TM, Murray EL, Sun M, White LA, Brooks LC, Green A, Hu AJ, McDonald DJ, Rosenfeld R, Shemetov D, Tibshirani RJ, Kandula S, Pei S, Shaman J, Yaari R, Yamana TK, Agarwal P, Balusu S, Gururajan G, Kamarthi H, Prakash BA, Raman R, Rodríguez A, Zhao Z, Meiyappan A, Omar S, Baccam P, Gurung HL, Stage SA, Suchoski BT, Ajelli M, Kummer AG, Litvinova M, Ventura PC, Wadsworth S, Niemi J, Carcelen E, Hill AL, Jung SM, Lemaitre JC, Lessler J, Loo SL, McKee CD, Sato K, Smith C, Truelove S, McAndrew T, Ye W, Bosse N, Hlavacek WS, Lin YT, Mallela A, Chen Y, Lamm SM, Lee J, Posner RG, Perofsky AC, Viboud C, Clemente L, Lu F, Meyer AG, Santillana M, Chinazzi M, Davis JT, Mu K, Piontti APY, Vespignani A, Xiong X, Ben-Nun M, Riley P, Turtle J, Hulme-Lowe C, Jessa S, Nagraj VP, Turner SD, Williams D, Basu A, Drake JM, Fox SJ, Gibson GC, Suez E, Thommes EW, Cojocaru MG, Cramer EY, Gerding A, Stark A, Ray EL, Reich NG, Shandross L, Wattanachit N, Wang Y, Zorn MW, Al Aawar M, Srivastava A, Meyers LA, Adiga A, Hurt B, Kaur G, Lewis BL, Marathe M, Venkatramanan S, Butler P, Farabow A, Muralidhar N, Ramakrishnan N, Reed C, Biggerstaff M, Borchering RK. Mathis SM, et al. Among authors: hlavacek ws. medRxiv [Preprint]. 2023 Dec 11:2023.12.08.23299726. doi: 10.1101/2023.12.08.23299726. medRxiv. 2023. PMID: 38168429 Free PMC article. Preprint.
Quantification of early nonpharmaceutical interventions aimed at slowing transmission of Coronavirus Disease 2019 in the Navajo Nation and surrounding states (Arizona, Colorado, New Mexico, and Utah).
Miller EF, Neumann J, Chen Y, Mallela A, Lin YT, Hlavacek WS, Posner RG. Miller EF, et al. Among authors: hlavacek ws. PLOS Glob Public Health. 2023 Jun 21;3(6):e0001490. doi: 10.1371/journal.pgph.0001490. eCollection 2023. PLOS Glob Public Health. 2023. PMID: 37342996 Free PMC article.
Impacts of vaccination and Severe Acute Respiratory Syndrome Coronavirus 2 variants Alpha and Delta on Coronavirus Disease 2019 transmission dynamics in four metropolitan areas of the United States.
Mallela A, Chen Y, Lin YT, Miller EF, Neumann J, He Z, Nelson KE, Posner RG, Hlavacek WS. Mallela A, et al. Among authors: hlavacek ws. medRxiv [Preprint]. 2024 Jan 8:2021.10.19.21265223. doi: 10.1101/2021.10.19.21265223. medRxiv. 2024. PMID: 34704095 Free PMC article. Updated. Preprint.
'On-the-fly' or 'generate-first' modeling?
Blinov ML, Faeder JR, Yang J, Goldstein B, Hlavacek WS. Blinov ML, et al. Among authors: hlavacek ws. Nat Biotechnol. 2005 Nov;23(11):1344-5; author reply 1345. doi: 10.1038/nbt1105-1344. Nat Biotechnol. 2005. PMID: 16273053 No abstract available.
Depicting signaling cascades.
Blinov ML, Yang J, Faeder JR, Hlavacek WS. Blinov ML, et al. Among authors: hlavacek ws. Nat Biotechnol. 2006 Feb;24(2):137-8; author reply 138. doi: 10.1038/nbt0206-137. Nat Biotechnol. 2006. PMID: 16465147 No abstract available.
On imposing detailed balance in complex reaction mechanisms.
Yang J, Bruno WJ, Hlavacek WS, Pearson JE. Yang J, et al. Among authors: hlavacek ws. Biophys J. 2006 Aug 1;91(3):1136-41. doi: 10.1529/biophysj.105.071852. Epub 2006 May 12. Biophys J. 2006. PMID: 16698778 Free PMC article. No abstract available.
Kinetic Monte Carlo method for rule-based modeling of biochemical networks.
Yang J, Monine MI, Faeder JR, Hlavacek WS. Yang J, et al. Among authors: hlavacek ws. Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Sep;78(3 Pt 1):031910. doi: 10.1103/PhysRevE.78.031910. Epub 2008 Sep 10. Phys Rev E Stat Nonlin Soft Matter Phys. 2008. PMID: 18851068 Free PMC article.
Simulation of large-scale rule-based models.
Colvin J, Monine MI, Faeder JR, Hlavacek WS, Von Hoff DD, Posner RG. Colvin J, et al. Among authors: hlavacek ws. Bioinformatics. 2009 Apr 1;25(7):910-7. doi: 10.1093/bioinformatics/btp066. Epub 2009 Feb 11. Bioinformatics. 2009. PMID: 19213740 Free PMC article.
Rule-based modeling of biochemical systems with BioNetGen.
Faeder JR, Blinov ML, Hlavacek WS. Faeder JR, et al. Among authors: hlavacek ws. Methods Mol Biol. 2009;500:113-67. doi: 10.1007/978-1-59745-525-1_5. Methods Mol Biol. 2009. PMID: 19399430 Free article.
115 results