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MACiE: a database of enzyme reaction mechanisms.
Holliday GL, Bartlett GJ, Almonacid DE, O'Boyle NM, Murray-Rust P, Thornton JM, Mitchell JB. Holliday GL, et al. Bioinformatics. 2005 Dec 1;21(23):4315-6. doi: 10.1093/bioinformatics/bti693. Epub 2005 Sep 27. Bioinformatics. 2005. PMID: 16188925 Free PMC article.
Using reaction mechanism to measure enzyme similarity.
O'Boyle NM, Holliday GL, Almonacid DE, Mitchell JB. O'Boyle NM, et al. Among authors: holliday gl. J Mol Biol. 2007 May 18;368(5):1484-99. doi: 10.1016/j.jmb.2007.02.065. Epub 2007 Mar 2. J Mol Biol. 2007. PMID: 17400244 Free PMC article.
The chemistry of protein catalysis.
Holliday GL, Almonacid DE, Mitchell JB, Thornton JM. Holliday GL, et al. J Mol Biol. 2007 Oct 5;372(5):1261-77. doi: 10.1016/j.jmb.2007.07.034. Epub 2007 Aug 2. J Mol Biol. 2007. PMID: 17727879
The CoFactor database: organic cofactors in enzyme catalysis.
Fischer JD, Holliday GL, Thornton JM. Fischer JD, et al. Among authors: holliday gl. Bioinformatics. 2010 Oct 1;26(19):2496-7. doi: 10.1093/bioinformatics/btq442. Epub 2010 Aug 2. Bioinformatics. 2010. PMID: 20679331 Free PMC article.
MACiE: exploring the diversity of biochemical reactions.
Holliday GL, Andreini C, Fischer JD, Rahman SA, Almonacid DE, Williams ST, Pearson WR. Holliday GL, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D783-9. doi: 10.1093/nar/gkr799. Epub 2011 Nov 3. Nucleic Acids Res. 2012. PMID: 22058127 Free PMC article.
The EBI enzyme portal.
Alcántara R, Onwubiko J, Cao H, Matos Pd, Cham JA, Jacobsen J, Holliday GL, Fischer JD, Rahman SA, Jassal B, Goujon M, Rowland F, Velankar S, López R, Overington JP, Kleywegt GJ, Hermjakob H, O'Donovan C, Martín MJ, Thornton JM, Steinbeck C. Alcántara R, et al. Among authors: holliday gl. Nucleic Acids Res. 2013 Jan;41(Database issue):D773-80. doi: 10.1093/nar/gks1112. Epub 2012 Nov 21. Nucleic Acids Res. 2013. PMID: 23175605 Free PMC article.
36 results