Holmes AD - Search Results

1

ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments.

Cozen AE, Quartley E, Holmes AD, Hrabeta-Robinson E, Phizicky EM, Lowe TM. Cozen AE, et al. Among authors: holmes ad. Nat Methods. 2015 Sep;12(9):879-84. doi: 10.1038/nmeth.3508. Epub 2015 Aug 3. Nat Methods. 2015. PMID: 26237225 Free PMC article.

2

The UCSC Archaeal Genome Browser: 2012 update.

Chan PP, Holmes AD, Smith AM, Tran D, Lowe TM. Chan PP, et al. Among authors: holmes ad. Nucleic Acids Res. 2012 Jan;40(Database issue):D646-52. doi: 10.1093/nar/gkr990. Epub 2011 Nov 12. Nucleic Acids Res. 2012. PMID: 22080555 Free PMC article.

3

Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations.

Qin W, Amin SA, Lundeen RA, Heal KR, Martens-Habbena W, Turkarslan S, Urakawa H, Costa KC, Hendrickson EL, Wang T, Beck DA, Tiquia-Arashiro SM, Taub F, Holmes AD, Vajrala N, Berube PM, Lowe TM, Moffett JW, Devol AH, Baliga NS, Arp DJ, Sayavedra-Soto LA, Hackett M, Armbrust EV, Ingalls AE, Stahl DA. Qin W, et al. Among authors: holmes ad. ISME J. 2018 Feb;12(2):508-519. doi: 10.1038/ismej.2017.186. Epub 2017 Oct 20. ISME J. 2018. PMID: 29053148 Free PMC article.

4

Predicting transfer RNA gene activity from sequence and genome context.

Thornlow BP, Armstrong J, Holmes AD, Howard JM, Corbett-Detig RB, Lowe TM. Thornlow BP, et al. Among authors: holmes ad. Genome Res. 2020 Jan;30(1):85-94. doi: 10.1101/gr.256164.119. Epub 2019 Dec 19. Genome Res. 2020. PMID: 31857444 Free PMC article.

5

A standardized ontology for naming tRNA-derived RNAs based on molecular origin.

Holmes AD, Chan PP, Chen Q, Ivanov P, Drouard L, Polacek N, Kay MA, Lowe TM. Holmes AD, et al. Nat Methods. 2023 May;20(5):627-628. doi: 10.1038/s41592-023-01813-2. Nat Methods. 2023. PMID: 36869120 Free PMC article. No abstract available.

6

Sex-split analysis of pathology and motor-behavioral outcomes in a mouse model of CLN8-Batten disease reveals an increased disease burden and trajectory in female Cln8^mnd mice.

Holmes AD, White KA, Pratt MA, Johnson TB, Likhite S, Meyer K, Weimer JM. Holmes AD, et al. Orphanet J Rare Dis. 2022 Nov 11;17(1):411. doi: 10.1186/s13023-022-02564-7. Orphanet J Rare Dis. 2022. PMID: 36369162 Free PMC article.

7

Creating Consensus: Revisiting the Emergency Medicine Resident Scholarly Activity Requirement.

Kane BG, Totten VY, Kraus CK, Allswede M, Diercks DB, Garg N, Ling L, McDonald EN, Rosenau AM, Wilk M, Holmes AD, Hemminger A, Greenberg MR. Kane BG, et al. Among authors: holmes ad. West J Emerg Med. 2019 Mar;20(2):369-375. doi: 10.5811/westjem.2018.10.39293. Epub 2018 Dec 5. West J Emerg Med. 2019. PMID: 30881559 Free PMC article.

8

Evidence-based update on rosacea comorbidities and their common physiologic pathways.

Holmes AD, Spoendlin J, Chien AL, Baldwin H, Chang ALS. Holmes AD, et al. J Am Acad Dermatol. 2018 Jan;78(1):156-166. doi: 10.1016/j.jaad.2017.07.055. Epub 2017 Oct 28. J Am Acad Dermatol. 2018. PMID: 29089181 Review.

9

Systemic lupus erythematosus following meningococcal vaccination.

Holmes AD, Abbasi OZ, Jacoby JL. Holmes AD, et al. Am J Emerg Med. 2018 Jan;36(1):170.e3-170.e4. doi: 10.1016/j.ajem.2017.10.020. Epub 2017 Oct 7. Am J Emerg Med. 2018. PMID: 29031481

10

Integrative concepts of rosacea pathophysiology, clinical presentation and new therapeutics.

Holmes AD, Steinhoff M. Holmes AD, et al. Exp Dermatol. 2017 Aug;26(8):659-667. doi: 10.1111/exd.13143. Epub 2016 Oct 9. Exp Dermatol. 2017. PMID: 27376863 Review.

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