Hong H - Search Results

1

Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing.

Xiao W, Ren L, Chen Z, Fang LT, Zhao Y, Lack J, Guan M, Zhu B, Jaeger E, Kerrigan L, Blomquist TM, Hung T, Sultan M, Idler K, Lu C, Scherer A, Kusko R, Moos M, Xiao C, Sherry ST, Abaan OD, Chen W, Chen X, Nordlund J, Liljedahl U, Maestro R, Polano M, Drabek J, Vojta P, Kõks S, Reimann E, Madala BS, Mercer T, Miller C, Jacob H, Truong T, Moshrefi A, Natarajan A, Granat A, Schroth GP, Kalamegham R, Peters E, Petitjean V, Walton A, Shen TW, Talsania K, Vera CJ, Langenbach K, de Mars M, Hipp JA, Willey JC, Wang J, Shetty J, Kriga Y, Raziuddin A, Tran B, Zheng Y, Yu Y, Cam M, Jailwala P, Nguyen C, Meerzaman D, Chen Q, Yan C, Ernest B, Mehra U, Jensen RV, Jones W, Li JL, Papas BN, Pirooznia M, Chen YC, Seifuddin F, Li Z, Liu X, Resch W, Wang J, Wu L, Yavas G, Miles C, Ning B, Tong W, Mason CE, Donaldson E, Lababidi S, Staudt LM, Tezak Z, Hong H, Wang C, Shi L. Xiao W, et al. Among authors: hong h. Nat Biotechnol. 2021 Sep;39(9):1141-1150. doi: 10.1038/s41587-021-00994-5. Epub 2021 Sep 9. Nat Biotechnol. 2021. PMID: 34504346 Free PMC article.

2

Prediction of estrogen receptor binding for 58,000 chemicals using an integrated system of a tree-based model with structural alerts.

Hong H, Tong W, Fang H, Shi L, Xie Q, Wu J, Perkins R, Walker JD, Branham W, Sheehan DM. Hong H, et al. Environ Health Perspect. 2002 Jan;110(1):29-36. doi: 10.1289/ehp.0211029. Environ Health Perspect. 2002. PMID: 11781162 Free PMC article.

3

Decision forest: combining the predictions of multiple independent decision tree models.

Tong W, Hong H, Fang H, Xie Q, Perkins R. Tong W, et al. Among authors: hong h. J Chem Inf Comput Sci. 2003 Mar-Apr;43(2):525-31. doi: 10.1021/ci020058s. J Chem Inf Comput Sci. 2003. PMID: 12653517

4

ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research.

Tong W, Cao X, Harris S, Sun H, Fang H, Fuscoe J, Harris A, Hong H, Xie Q, Perkins R, Shi L, Casciano D. Tong W, et al. Among authors: hong h. Environ Health Perspect. 2003 Nov;111(15):1819-26. doi: 10.1289/ehp.6497. Environ Health Perspect. 2003. PMID: 14630514 Free PMC article. Review.

5

Assessment of prediction confidence and domain extrapolation of two structure-activity relationship models for predicting estrogen receptor binding activity.

Tong W, Xie Q, Hong H, Shi L, Fang H, Perkins R. Tong W, et al. Among authors: hong h. Environ Health Perspect. 2004 Aug;112(12):1249-54. doi: 10.1289/txg.7125. Environ Health Perspect. 2004. PMID: 15345371 Free PMC article.

6

Multiclass Decision Forest--a novel pattern recognition method for multiclass classification in microarray data analysis.

Hong H, Tong W, Perkins R, Fang H, Xie Q, Shi L. Hong H, et al. DNA Cell Biol. 2004 Oct;23(10):685-94. doi: 10.1089/dna.2004.23.685. DNA Cell Biol. 2004. PMID: 15585126

7

Using decision forest to classify prostate cancer samples on the basis of SELDI-TOF MS data: assessing chance correlation and prediction confidence.

Tong W, Xie Q, Hong H, Shi L, Fang H, Perkins R, Petricoin EF. Tong W, et al. Among authors: hong h. Environ Health Perspect. 2004 Nov;112(16):1622-7. doi: 10.1289/txg.7109. Environ Health Perspect. 2004. PMID: 15598613 Free PMC article.

8

Microarray scanner calibration curves: characteristics and implications.

Shi L, Tong W, Su Z, Han T, Han J, Puri RK, Fang H, Frueh FW, Goodsaid FM, Guo L, Branham WS, Chen JJ, Xu ZA, Harris SC, Hong H, Xie Q, Perkins RG, Fuscoe JC. Shi L, et al. Among authors: hong h. BMC Bioinformatics. 2005 Jul 15;6 Suppl 2(Suppl 2):S11. doi: 10.1186/1471-2105-6-S2-S11. BMC Bioinformatics. 2005. PMID: 16026596 Free PMC article.

9

Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential.

Shi L, Tong W, Fang H, Scherf U, Han J, Puri RK, Frueh FW, Goodsaid FM, Guo L, Su Z, Han T, Fuscoe JC, Xu ZA, Patterson TA, Hong H, Xie Q, Perkins RG, Chen JJ, Casciano DA. Shi L, et al. Among authors: hong h. BMC Bioinformatics. 2005 Jul 15;6 Suppl 2(Suppl 2):S12. doi: 10.1186/1471-2105-6-S2-S12. BMC Bioinformatics. 2005. PMID: 16026597 Free PMC article.

10

Decision forest analysis of 61 single nucleotide polymorphisms in a case-control study of esophageal cancer; a novel method.

Xie Q, Ratnasinghe LD, Hong H, Perkins R, Tang ZZ, Hu N, Taylor PR, Tong W. Xie Q, et al. Among authors: hong h. BMC Bioinformatics. 2005 Jul 15;6 Suppl 2(Suppl 2):S4. doi: 10.1186/1471-2105-6-S2-S4. BMC Bioinformatics. 2005. PMID: 16026601 Free PMC article.

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