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The genome of Onchocerca volvulus, agent of river blindness.
Cotton JA, Bennuru S, Grote A, Harsha B, Tracey A, Beech R, Doyle SR, Dunn M, Hotopp JC, Holroyd N, Kikuchi T, Lambert O, Mhashilkar A, Mutowo P, Nursimulu N, Ribeiro JM, Rogers MB, Stanley E, Swapna LS, Tsai IJ, Unnasch TR, Voronin D, Parkinson J, Nutman TB, Ghedin E, Berriman M, Lustigman S. Cotton JA, et al. Among authors: hotopp jc. Nat Microbiol. 2016 Nov 21;2:16216. doi: 10.1038/nmicrobiol.2016.216. Nat Microbiol. 2016. PMID: 27869790 Free PMC article.
Extensive genomic diversity of closely related Wolbachia strains.
Ishmael N, Hotopp JCD, Ioannidis P, Biber S, Sakamoto J, Siozios S, Nene V, Werren J, Bourtzis K, Bordenstein SR, Tettelin H. Ishmael N, et al. Among authors: hotopp jcd. Microbiology (Reading). 2009 Jul;155(Pt 7):2211-2222. doi: 10.1099/mic.0.027581-0. Epub 2009 Apr 23. Microbiology (Reading). 2009. PMID: 19389774 Free PMC article.
Phenotypic, genomic, and transcriptional characterization of Streptococcus pneumoniae interacting with human pharyngeal cells.
Kimaro Mlacha SZ, Romero-Steiner S, Hotopp JC, Kumar N, Ishmael N, Riley DR, Farooq U, Creasy TH, Tallon LJ, Liu X, Goldsmith CS, Sampson J, Carlone GM, Hollingshead SK, Scott JA, Tettelin H. Kimaro Mlacha SZ, et al. Among authors: hotopp jc. BMC Genomics. 2013 Jun 9;14:383. doi: 10.1186/1471-2164-14-383. BMC Genomics. 2013. PMID: 23758733 Free PMC article.
Pim kinase inhibitor co-treatment decreases alternative non-homologous end-joining DNA repair and genomic instability induced by topoisomerase 2 inhibitors in cells with FLT3 internal tandem duplication.
Scarpa M, Kapoor S, Tvedte ES, Doshi KA, Zou YS, Singh P, Lee JK, Chatterjee A, Ali MKM, Bromley RE, Hotopp JCD, Rassool FV, Baer MR. Scarpa M, et al. Among authors: hotopp jcd. Oncotarget. 2021 Aug 31;12(18):1763-1779. doi: 10.18632/oncotarget.28042. eCollection 2021 Aug 31. Oncotarget. 2021. PMID: 34504649 Free PMC article.
Common Analysis of Direct RNA SequencinG CUrrently Leads to Misidentification of 5-Methylcytosine Modifications at GCU Motifs.
Watson KJ, Bromley RE, Sparklin BC, Gasser MT, Bhattacharya T, Lebov JF, Tyson T, Teigen LE, Graf KT, Michalski M, Bruno VM, Lindsey ARI, Hardy RW, Newton ILG, Hotopp JCD. Watson KJ, et al. Among authors: hotopp jcd. bioRxiv [Preprint]. 2023 May 3:2023.05.03.539298. doi: 10.1101/2023.05.03.539298. bioRxiv. 2023. PMID: 37205495 Free PMC article. Updated. Preprint.