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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, Goryanin II, Hedley WJ, Hodgman TC, Hofmeyr JH, Hunter PJ, Juty NS, Kasberger JL, Kremling A, Kummer U, Le Novère N, Loew LM, Lucio D, Mendes P, Minch E, Mjolsness ED, Nakayama Y, Nelson MR, Nielsen PF, Sakurada T, Schaff JC, Shapiro BE, Shimizu TS, Spence HD, Stelling J, Takahashi K, Tomita M, Wagner J, Wang J; SBML Forum. Hucka M, et al. Bioinformatics. 2003 Mar 1;19(4):524-31. doi: 10.1093/bioinformatics/btg015. Bioinformatics. 2003. PMID: 12611808
MathSBML: a package for manipulating SBML-based biological models.
Shapiro BE, Hucka M, Finney A, Doyle J. Shapiro BE, et al. Among authors: hucka m. Bioinformatics. 2004 Nov 1;20(16):2829-31. doi: 10.1093/bioinformatics/bth271. Epub 2004 Apr 15. Bioinformatics. 2004. PMID: 15087311 Free PMC article.
Minimum information requested in the annotation of biochemical models (MIRIAM).
Le Novère N, Finney A, Hucka M, Bhalla US, Campagne F, Collado-Vides J, Crampin EJ, Halstead M, Klipp E, Mendes P, Nielsen P, Sauro H, Shapiro B, Snoep JL, Spence HD, Wanner BL. Le Novère N, et al. Among authors: hucka m. Nat Biotechnol. 2005 Dec;23(12):1509-15. doi: 10.1038/nbt1156. Nat Biotechnol. 2005. PMID: 16333295
CellML2SBML: conversion of CellML into SBML.
Schilstra MJ, Li L, Matthews J, Finney A, Hucka M, Le Novère N. Schilstra MJ, et al. Among authors: hucka m. Bioinformatics. 2006 Apr 15;22(8):1018-20. doi: 10.1093/bioinformatics/btl047. Epub 2006 Feb 10. Bioinformatics. 2006. PMID: 16473867 Free article.
SBMLToolbox: an SBML toolbox for MATLAB users.
Keating SM, Bornstein BJ, Finney A, Hucka M. Keating SM, et al. Among authors: hucka m. Bioinformatics. 2006 May 15;22(10):1275-7. doi: 10.1093/bioinformatics/btl111. Epub 2006 Mar 30. Bioinformatics. 2006. PMID: 16574696 Free article.
60 results