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Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins.
Samandi S, Roy AV, Delcourt V, Lucier JF, Gagnon J, Beaudoin MC, Vanderperre B, Breton MA, Motard J, Jacques JF, Brunelle M, Gagnon-Arsenault I, Fournier I, Ouangraoua A, Hunting DJ, Cohen AA, Landry CR, Scott MS, Roucou X. Samandi S, et al. Among authors: jacques jf. Elife. 2017 Oct 30;6:e27860. doi: 10.7554/eLife.27860. Elife. 2017. PMID: 29083303 Free PMC article.
OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes.
Brunet MA, Brunelle M, Lucier JF, Delcourt V, Levesque M, Grenier F, Samandi S, Leblanc S, Aguilar JD, Dufour P, Jacques JF, Fournier I, Ouangraoua A, Scott MS, Boisvert FM, Roucou X. Brunet MA, et al. Among authors: jacques jf. Nucleic Acids Res. 2019 Jan 8;47(D1):D403-D410. doi: 10.1093/nar/gky936. Nucleic Acids Res. 2019. PMID: 30299502 Free PMC article.
UBB pseudogene 4 encodes functional ubiquitin variants.
Dubois ML, Meller A, Samandi S, Brunelle M, Frion J, Brunet MA, Toupin A, Beaudoin MC, Jacques JF, Lévesque D, Scott MS, Lavigne P, Roucou X, Boisvert FM. Dubois ML, et al. Among authors: jacques jf. Nat Commun. 2020 Mar 11;11(1):1306. doi: 10.1038/s41467-020-15090-6. Nat Commun. 2020. PMID: 32161257 Free PMC article.
OpenProt 2021: deeper functional annotation of the coding potential of eukaryotic genomes.
Brunet MA, Lucier JF, Levesque M, Leblanc S, Jacques JF, Al-Saedi HRH, Guilloy N, Grenier F, Avino M, Fournier I, Salzet M, Ouangraoua A, Scott MS, Boisvert FM, Roucou X. Brunet MA, et al. Among authors: jacques jf. Nucleic Acids Res. 2021 Jan 8;49(D1):D380-D388. doi: 10.1093/nar/gkaa1036. Nucleic Acids Res. 2021. PMID: 33179748 Free PMC article.
Newfound Coding Potential of Transcripts Unveils Missing Members of Human Protein Communities.
Leblanc S, Brunet MA, Jacques JF, Lekehal AM, Duclos A, Tremblay A, Bruggeman-Gascon A, Samandi S, Brunelle M, Cohen AA, Scott MS, Roucou X. Leblanc S, et al. Among authors: jacques jf. Genomics Proteomics Bioinformatics. 2023 Jun;21(3):515-534. doi: 10.1016/j.gpb.2022.09.008. Epub 2022 Sep 30. Genomics Proteomics Bioinformatics. 2023. PMID: 36183975 Free PMC article.
22 results