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Page 1
SyDiG: uncovering Synteny in Distant Genomes.
Jean G, Nikolski M. Jean G, et al. Int J Bioinform Res Appl. 2011;7(1):43-62. doi: 10.1504/IJBRA.2011.039169. Int J Bioinform Res Appl. 2011. PMID: 21441096 Free article.
Comparative genomics of protoploid Saccharomycetaceae.
Génolevures Consortium; Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, Jubin C, Poulain J, Barbe V, Ségurens B, Artiguenave F, Anthouard V, Vacherie B, Val ME, Fulton RS, Minx P, Wilson R, Durrens P, Jean G, Marck C, Martin T, Nikolski M, Rolland T, Seret ML, Casarégola S, Despons L, Fairhead C, Fischer G, Lafontaine I, Leh V, Lemaire M, de Montigny J, Neuvéglise C, Thierry A, Blanc-Lenfle I, Bleykasten C, Diffels J, Fritsch E, Frangeul L, Goëffon A, Jauniaux N, Kachouri-Lafond R, Payen C, Potier S, Pribylova L, Ozanne C, Richard GF, Sacerdot C, Straub ML, Talla E. Génolevures Consortium, et al. Among authors: jean g. Genome Res. 2009 Oct;19(10):1696-709. doi: 10.1101/gr.091546.109. Epub 2009 Jun 12. Genome Res. 2009. PMID: 19525356 Free PMC article.
RNA-Seq read alignments with PALMapper.
Jean G, Kahles A, Sreedharan VT, De Bona F, Rätsch G. Jean G, et al. Curr Protoc Bioinformatics. 2010 Dec;Chapter 11:Unit 11.6. doi: 10.1002/0471250953.bi1106s32. Curr Protoc Bioinformatics. 2010. PMID: 21154708
Systematic evaluation of spliced alignment programs for RNA-seq data.
Engström PG, Steijger T, Sipos B, Grant GR, Kahles A, Rätsch G, Goldman N, Hubbard TJ, Harrow J, Guigó R, Bertone P; RGASP Consortium. Engström PG, et al. Nat Methods. 2013 Dec;10(12):1185-91. doi: 10.1038/nmeth.2722. Epub 2013 Nov 3. Nat Methods. 2013. PMID: 24185836 Free PMC article.
Assessment of transcript reconstruction methods for RNA-seq.
Steijger T, Abril JF, Engström PG, Kokocinski F; RGASP Consortium; Hubbard TJ, Guigó R, Harrow J, Bertone P. Steijger T, et al. Nat Methods. 2013 Dec;10(12):1177-84. doi: 10.1038/nmeth.2714. Epub 2013 Nov 3. Nat Methods. 2013. PMID: 24185837 Free PMC article.
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation.
Dubin MJ, Zhang P, Meng D, Remigereau MS, Osborne EJ, Paolo Casale F, Drewe P, Kahles A, Jean G, Vilhjálmsson B, Jagoda J, Irez S, Voronin V, Song Q, Long Q, Rätsch G, Stegle O, Clark RM, Nordborg M. Dubin MJ, et al. Among authors: jean g. Elife. 2015 May 5;4:e05255. doi: 10.7554/eLife.05255. Elife. 2015. PMID: 25939354 Free PMC article.
Multiple reference genomes and transcriptomes for Arabidopsis thaliana.
Gan X, Stegle O, Behr J, Steffen JG, Drewe P, Hildebrand KL, Lyngsoe R, Schultheiss SJ, Osborne EJ, Sreedharan VT, Kahles A, Bohnert R, Jean G, Derwent P, Kersey P, Belfield EJ, Harberd NP, Kemen E, Toomajian C, Kover PX, Clark RM, Rätsch G, Mott R. Gan X, et al. Among authors: jean g. Nature. 2011 Aug 28;477(7365):419-23. doi: 10.1038/nature10414. Nature. 2011. PMID: 21874022 Free PMC article.
328 results