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Text mining for biology--the way forward: opinions from leading scientists.
Altman RB, Bergman CM, Blake J, Blaschke C, Cohen A, Gannon F, Grivell L, Hahn U, Hersh W, Hirschman L, Jensen LJ, Krallinger M, Mons B, O'Donoghue SI, Peitsch MC, Rebholz-Schuhmann D, Shatkay H, Valencia A. Altman RB, et al. Among authors: jensen lj. Genome Biol. 2008;9 Suppl 2(Suppl 2):S7. doi: 10.1186/gb-2008-9-s2-s7. Epub 2008 Sep 1. Genome Biol. 2008. PMID: 18834498 Free PMC article.
Reflect: augmented browsing for the life scientist.
Pafilis E, O'Donoghue SI, Jensen LJ, Horn H, Kuhn M, Brown NP, Schneider R. Pafilis E, et al. Among authors: jensen lj. Nat Biotechnol. 2009 Jun;27(6):508-10. doi: 10.1038/nbt0609-508. Nat Biotechnol. 2009. PMID: 19513049 Free article. No abstract available.
Martini: using literature keywords to compare gene sets.
Soldatos TG, O'Donoghue SI, Satagopam VP, Jensen LJ, Brown NP, Barbosa-Silva A, Schneider R. Soldatos TG, et al. Among authors: jensen lj. Nucleic Acids Res. 2010 Jan;38(1):26-38. doi: 10.1093/nar/gkp876. Epub 2009 Oct 25. Nucleic Acids Res. 2010. PMID: 19858102 Free PMC article.
Overview of the interactive task in BioCreative V.
Wang Q, S Abdul S, Almeida L, Ananiadou S, Balderas-Martínez YI, Batista-Navarro R, Campos D, Chilton L, Chou HJ, Contreras G, Cooper L, Dai HJ, Ferrell B, Fluck J, Gama-Castro S, George N, Gkoutos G, Irin AK, Jensen LJ, Jimenez S, Jue TR, Keseler I, Madan S, Matos S, McQuilton P, Milacic M, Mort M, Natarajan J, Pafilis E, Pereira E, Rao S, Rinaldi F, Rothfels K, Salgado D, Silva RM, Singh O, Stefancsik R, Su CH, Subramani S, Tadepally HD, Tsaprouni L, Vasilevsky N, Wang X, Chatr-Aryamontri A, Laulederkind SJ, Matis-Mitchell S, McEntyre J, Orchard S, Pundir S, Rodriguez-Esteban R, Van Auken K, Lu Z, Schaeffer M, Wu CH, Hirschman L, Arighi CN. Wang Q, et al. Among authors: jensen lj. Database (Oxford). 2016 Sep 1;2016:baw119. doi: 10.1093/database/baw119. Print 2016. Database (Oxford). 2016. PMID: 27589961 Free PMC article.
Review: Opportunities and barriers for omics-based biomarker discovery in steatotic liver diseases.
Thiele M, Villesen IF, Niu L, Johansen S, Sulek K, Nishijima S, Van Espen L, Keller M, Israelsen M, Suvitaival T, de Zawadzki A, Juel HB, Brol MJ, Stinson SE, Huang Y, Alvarez Silva MC, Kuhn M, Anastasiadou E, Leeming DJ, Karsdal M, Matthijnssens J, Arumugam M, Dalgaard LT, Legido-Quigley C, Mann M, Trebicka J, Bork P, Jensen LJ, Hansen T, Krag A; MicrobLiver and GALAXY consortia; GALAXY consortium; MicrobLiver consortium. Thiele M, et al. Among authors: jensen lj. J Hepatol. 2024 Mar 27:S0168-8278(24)00219-8. doi: 10.1016/j.jhep.2024.03.035. Online ahead of print. J Hepatol. 2024. PMID: 38552880 Review.
A quantitative and site-specific atlas of the citrullinome reveals widespread existence of citrullination and insights into PADI4 substrates.
Rebak AS, Hendriks IA, Elsborg JD, Buch-Larsen SC, Nielsen CH, Terslev L, Kirsch R, Damgaard D, Doncheva NT, Lennartsson C, Rykær M, Jensen LJ, Christophorou MA, Nielsen ML. Rebak AS, et al. Among authors: jensen lj. Nat Struct Mol Biol. 2024 Feb 6. doi: 10.1038/s41594-024-01214-9. Online ahead of print. Nat Struct Mol Biol. 2024. PMID: 38321148
Overview of the Knowledge Management Center for Illuminating the Druggable Genome.
Oprea TI, Bologa C, Holmes J, Mathias S, Metzger VT, Waller A, Yang JJ, Leach AR, Jensen LJ, Kelleher KJ, Sheils TK, Mathé E, Avram S, Edwards JS. Oprea TI, et al. Among authors: jensen lj. Drug Discov Today. 2024 Mar;29(3):103882. doi: 10.1016/j.drudis.2024.103882. Epub 2024 Jan 11. Drug Discov Today. 2024. PMID: 38218214 Free article. Review.
Hunting for the elusive target antigen in gestational alloimmune liver disease (GALD).
Rieneck K, Rasmussen KK, Schoof EM, Clausen FB, Holze H, Bergholt T, Jørgensen MH, Christensen VB, Almaas R, Jordal PL, Locard-Paulet M, Runager K, Nielsen LK, Schlotmann BC, Weischenfeldt JL, Jensen LJ, Dziegiel MH. Rieneck K, et al. Among authors: jensen lj. PLoS One. 2023 Oct 20;18(10):e0286432. doi: 10.1371/journal.pone.0286432. eCollection 2023. PLoS One. 2023. PMID: 37862305 Free PMC article.
301 results