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BioXSD: the common data-exchange format for everyday bioinformatics web services.
Kalas M, Puntervoll P, Joseph A, Bartaseviciūte E, Töpfer A, Venkataraman P, Pettifer S, Bryne JC, Ison J, Blanchet C, Rapacki K, Jonassen I. Kalas M, et al. Among authors: jonassen i. Bioinformatics. 2010 Sep 15;26(18):i540-6. doi: 10.1093/bioinformatics/btq391. Bioinformatics. 2010. PMID: 20823319 Free PMC article.
Structure motif discovery and mining the PDB.
Jonassen I, Eidhammer I, Conklin D, Taylor WR. Jonassen I, et al. Bioinformatics. 2002 Feb;18(2):362-7. doi: 10.1093/bioinformatics/18.2.362. Bioinformatics. 2002. PMID: 11847094
RBR: library-less repeat detection for ESTs.
Malde K, Schneeberger K, Coward E, Jonassen I. Malde K, et al. Among authors: jonassen i. Bioinformatics. 2006 Sep 15;22(18):2232-6. doi: 10.1093/bioinformatics/btl368. Epub 2006 Jul 12. Bioinformatics. 2006. PMID: 16837527
The EMBRACE web service collection.
Pettifer S, Ison J, Kalas M, Thorne D, McDermott P, Jonassen I, Liaquat A, Fernández JM, Rodriguez JM; INB-Partners; Pisano DG, Blanchet C, Uludag M, Rice P, Bartaseviciute E, Rapacki K, Hekkelman M, Sand O, Stockinger H, Clegg AB, Bongcam-Rudloff E, Salzemann J, Breton V, Attwood TK, Cameron G, Vriend G. Pettifer S, et al. Among authors: jonassen i. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W683-8. doi: 10.1093/nar/gkq297. Epub 2010 May 12. Nucleic Acids Res. 2010. PMID: 20462862 Free PMC article.
Linkage-disequilibrium-based binning affects the interpretation of GWASs.
Christoforou A, Dondrup M, Mattingsdal M, Mattheisen M, Giddaluru S, Nöthen MM, Rietschel M, Cichon S, Djurovic S, Andreassen OA, Jonassen I, Steen VM, Puntervoll P, Le Hellard S. Christoforou A, et al. Among authors: jonassen i. Am J Hum Genet. 2012 Apr 6;90(4):727-33. doi: 10.1016/j.ajhg.2012.02.025. Epub 2012 Mar 22. Am J Hum Genet. 2012. PMID: 22444669 Free PMC article.
Filtering duplicate reads from 454 pyrosequencing data.
Balzer S, Malde K, Grohme MA, Jonassen I. Balzer S, et al. Among authors: jonassen i. Bioinformatics. 2013 Apr 1;29(7):830-6. doi: 10.1093/bioinformatics/btt047. Epub 2013 Feb 1. Bioinformatics. 2013. PMID: 23376350 Free PMC article.
142 results