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The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.
J Biomed Semantics. 2010 Aug 21;1(1):8. doi: 10.1186/2041-1480-1-8.
J Biomed Semantics. 2010.
PMID: 20727200
Free PMC article.
BioMoby extensions to the Taverna workflow management and enactment software.
Kawas E, Senger M, Wilkinson MD.
Kawas E, et al.
BMC Bioinformatics. 2006 Nov 30;7:523. doi: 10.1186/1471-2105-7-523.
BMC Bioinformatics. 2006.
PMID: 17137515
Free PMC article.
Item in Clipboard
OWL2Perl: creating Perl modules from OWL class definitions.
Kawas E, Wilkinson MD.
Kawas E, et al.
Bioinformatics. 2010 Sep 15;26(18):2357-8. doi: 10.1093/bioinformatics/btq416. Epub 2010 Jul 13.
Bioinformatics. 2010.
PMID: 20628074
Free PMC article.
Item in Clipboard
Interoperability with Moby 1.0--it's better than sharing your toothbrush!
BioMoby Consortium; Wilkinson MD, Senger M, Kawas E, Bruskiewich R, Gouzy J, Noirot C, Bardou P, Ng A, Haase D, Saiz Ede A, Wang D, Gibbons F, Gordon PM, Sensen CW, Carrasco JM, Fernández JM, Shen L, Links M, Ng M, Opushneva N, Neerincx PB, Leunissen JA, Ernst R, Twigger S, Usadel B, Good B, Wong Y, Stein L, Crosby W, Karlsson J, Royo R, Párraga I, Ramírez S, Gelpi JL, Trelles O, Pisano DG, Jimenez N, Kerhornou A, Rosset R, Zamacola L, Tarraga J, Huerta-Cepas J, Carazo JM, Dopazo J, Guigo R, Navarro A, Orozco M, Valencia A, Claros MG, Pérez AJ, Aldana J, Rojano M, Fernandez-Santa Cruz R, Navas I, Schiltz G, Farmer A, Gessler D, Schoof H, Groscurth A.
BioMoby Consortium, et al.
Brief Bioinform. 2008 May;9(3):220-31. doi: 10.1093/bib/bbn003. Epub 2008 Jan 31.
Brief Bioinform. 2008.
PMID: 18238804
Review.
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iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website.
Good BM, Kawas EA, Kuo BY, Wilkinson MD.
Good BM, et al. Among authors: kawas ea.
BMC Bioinformatics. 2006 Dec 15;7:534. doi: 10.1186/1471-2105-7-534.
BMC Bioinformatics. 2006.
PMID: 17173692
Free PMC article.
Item in Clipboard
DataBiNS: a BioMoby-based data-mining workflow for biological pathways and non-synonymous SNPs.
Song YC, Kawas E, Good BM, Wilkinson MD, Tebbutt SJ.
Song YC, et al.
Bioinformatics. 2007 Mar 15;23(6):780-2. doi: 10.1093/bioinformatics/btl648. Epub 2007 Jan 18.
Bioinformatics. 2007.
PMID: 17237074
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SADI, SHARE, and the in silico scientific method.
Wilkinson MD, McCarthy L, Vandervalk B, Withers D, Kawas E, Samadian S.
Wilkinson MD, et al.
BMC Bioinformatics. 2010 Dec 21;11 Suppl 12(Suppl 12):S7. doi: 10.1186/1471-2105-11-S12-S7.
BMC Bioinformatics. 2010.
PMID: 21210986
Free PMC article.
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