Kelly S - Search Results

1

TransRate: reference-free quality assessment of de novo transcriptome assemblies.

Smith-Unna R, Boursnell C, Patro R, Hibberd JM, Kelly S. Smith-Unna R, et al. Among authors: kelly s. Genome Res. 2016 Aug;26(8):1134-44. doi: 10.1101/gr.196469.115. Epub 2016 Jun 1. Genome Res. 2016. PMID: 27252236 Free PMC article.

2

Evolution of GOLDEN2-LIKE gene function in C(3) and C (4) plants.

Wang P, Fouracre J, Kelly S, Karki S, Gowik U, Aubry S, Shaw MK, Westhoff P, Slamet-Loedin IH, Quick WP, Hibberd JM, Langdale JA. Wang P, et al. Among authors: kelly s. Planta. 2013 Feb;237(2):481-95. doi: 10.1007/s00425-012-1754-3. Epub 2012 Sep 12. Planta. 2013. PMID: 22968911 Free PMC article.

3

Shared origins of a key enzyme during the evolution of C4 and CAM metabolism.

Christin PA, Arakaki M, Osborne CP, Bräutigam A, Sage RF, Hibberd JM, Kelly S, Covshoff S, Wong GK, Hancock L, Edwards EJ. Christin PA, et al. Among authors: kelly s. J Exp Bot. 2014 Jul;65(13):3609-21. doi: 10.1093/jxb/eru087. Epub 2014 Mar 17. J Exp Bot. 2014. PMID: 24638902 Free PMC article.

4

The impact of widespread regulatory neofunctionalization on homeolog gene evolution following whole-genome duplication in maize.

Hughes TE, Langdale JA, Kelly S. Hughes TE, et al. Among authors: kelly s. Genome Res. 2014 Aug;24(8):1348-55. doi: 10.1101/gr.172684.114. Epub 2014 Apr 30. Genome Res. 2014. PMID: 24788921 Free PMC article.

5

Deep evolutionary comparison of gene expression identifies parallel recruitment of trans-factors in two independent origins of C4 photosynthesis.

Aubry S, Kelly S, Kümpers BM, Smith-Unna RD, Hibberd JM. Aubry S, et al. Among authors: kelly s. PLoS Genet. 2014 Jun 5;10(6):e1004365. doi: 10.1371/journal.pgen.1004365. eCollection 2014 Jun. PLoS Genet. 2014. PMID: 24901697 Free PMC article.

6

RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications.

Lyu MJ, Gowik U, Kelly S, Covshoff S, Mallmann J, Westhoff P, Hibberd JM, Stata M, Sage RF, Lu H, Wei X, Wong GK, Zhu XG. Lyu MJ, et al. Among authors: kelly s. BMC Evol Biol. 2015 Jun 18;15:116. doi: 10.1186/s12862-015-0399-9. BMC Evol Biol. 2015. PMID: 26084484 Free PMC article.

7

C4 Photosynthesis in the Rice Paddy: Insights from the Noxious Weed Echinochloa glabrescens.

Covshoff S, Szecowka M, Hughes TE, Smith-Unna R, Kelly S, Bailey KJ, Sage TL, Pachebat JA, Leegood R, Hibberd JM. Covshoff S, et al. Among authors: kelly s. Plant Physiol. 2016 Jan;170(1):57-73. doi: 10.1104/pp.15.00889. Epub 2015 Nov 2. Plant Physiol. 2016. PMID: 26527656 Free PMC article.

8

Independent and Parallel Evolution of New Genes by Gene Duplication in Two Origins of C4 Photosynthesis Provides New Insight into the Mechanism of Phloem Loading in C4 Species.

Emms DM, Covshoff S, Hibberd JM, Kelly S. Emms DM, et al. Among authors: kelly s. Mol Biol Evol. 2016 Jul;33(7):1796-806. doi: 10.1093/molbev/msw057. Epub 2016 Mar 24. Mol Biol Evol. 2016. PMID: 27016024 Free PMC article.

9

Correction: Deep Evolutionary Comparison of Gene Expression Identifies Parallel Recruitment of Trans-Factors in Two Independent Origins of C4 Photosynthesis.

Aubry S, Kelly S, Kümpers BM, Smith-Unna RD, Hibberd JM. Aubry S, et al. Among authors: kelly s. PLoS Genet. 2016 May 24;12(5):e1006087. doi: 10.1371/journal.pgen.1006087. eCollection 2016 May. PLoS Genet. 2016. PMID: 27220009 Free PMC article.

10

Selection-driven cost-efficiency optimization of transcripts modulates gene evolutionary rate in bacteria.

Seward EA, Kelly S. Seward EA, et al. Among authors: kelly s. Genome Biol. 2018 Jul 31;19(1):102. doi: 10.1186/s13059-018-1480-7. Genome Biol. 2018. PMID: 30064467 Free PMC article.

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