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Per-channel basis normalization methods for flow cytometry data.
Cytometry A. 2010 Feb;77(2):121-31. doi: 10.1002/cyto.a.20823.
Cytometry A. 2010.
PMID: 19899135
Free PMC article.
B cells with high side scatter parameter by flow cytometry correlate with inferior survival in diffuse large B-cell lymphoma.
Bashashati A, Johnson NA, Khodabakhshi AH, Whiteside MD, Zare H, Scott DW, Lo K, Gottardo R, Brinkman FS, Connors JM, Slack GW, Gascoyne RD, Weng AP, Brinkman RR.
Bashashati A, et al. Among authors: khodabakhshi ah.
Am J Clin Pathol. 2012 May;137(5):805-14. doi: 10.1309/AJCPGR8BG4JDVOWR.
Am J Clin Pathol. 2012.
PMID: 22523221
Free PMC article.
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Critical assessment of automated flow cytometry data analysis techniques.
Aghaeepour N, Finak G; FlowCAP Consortium; DREAM Consortium; Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH.
Aghaeepour N, et al.
Nat Methods. 2013 Mar;10(3):228-38. doi: 10.1038/nmeth.2365. Epub 2013 Feb 10.
Nat Methods. 2013.
PMID: 23396282
Free PMC article.
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Recurrent targets of aberrant somatic hypermutation in lymphoma.
Khodabakhshi AH, Morin RD, Fejes AP, Mungall AJ, Mungall KL, Bolger-Munro M, Johnson NA, Connors JM, Gascoyne RD, Marra MA, Birol I, Jones SJ.
Khodabakhshi AH, et al.
Oncotarget. 2012 Nov;3(11):1308-19. doi: 10.18632/oncotarget.653.
Oncotarget. 2012.
PMID: 23131835
Free PMC article.
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Stable structure-approximating inverse protein folding in 2D hydrophobic-polar-cysteine (HPC) model.
Khodabakhshi AH, Manuch J, Rafiey A, Gupta A.
Khodabakhshi AH, et al.
J Comput Biol. 2009 Jan;16(1):19-30. doi: 10.1089/cmb.2008.0096.
J Comput Biol. 2009.
PMID: 19072580
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Inverse protein folding in 3D hexagonal prism lattice under HPC model.
Khodabakhshi AH, Manuch J, Rafiey A, Gupta A.
Khodabakhshi AH, et al.
J Comput Biol. 2009 Jun;16(6):769-802. doi: 10.1089/cmb.2008.0202.
J Comput Biol. 2009.
PMID: 19522663
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Human variation database: an open-source database template for genomic discovery.
Fejes AP, Khodabakhshi AH, Birol I, Jones SJ.
Fejes AP, et al. Among authors: khodabakhshi ah.
Bioinformatics. 2011 Apr 15;27(8):1155-6. doi: 10.1093/bioinformatics/btr100. Epub 2011 Mar 2.
Bioinformatics. 2011.
PMID: 21367872
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Metascape provides a biologist-oriented resource for the analysis of systems-level datasets.
Zhou Y, Zhou B, Pache L, Chang M, Khodabakhshi AH, Tanaseichuk O, Benner C, Chanda SK.
Zhou Y, et al. Among authors: khodabakhshi ah.
Nat Commun. 2019 Apr 3;10(1):1523. doi: 10.1038/s41467-019-09234-6.
Nat Commun. 2019.
PMID: 30944313
Free PMC article.
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