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B cells with high side scatter parameter by flow cytometry correlate with inferior survival in diffuse large B-cell lymphoma.
Am J Clin Pathol. 2012 May;137(5):805-14. doi: 10.1309/AJCPGR8BG4JDVOWR.
Am J Clin Pathol. 2012.
PMID: 22523221
Free PMC article.
Per-channel basis normalization methods for flow cytometry data.
Hahne F, Khodabakhshi AH, Bashashati A, Wong CJ, Gascoyne RD, Weng AP, Seyfert-Margolis V, Bourcier K, Asare A, Lumley T, Gentleman R, Brinkman RR.
Hahne F, et al. Among authors: khodabakhshi ah.
Cytometry A. 2010 Feb;77(2):121-31. doi: 10.1002/cyto.a.20823.
Cytometry A. 2010.
PMID: 19899135
Free PMC article.
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Recurrent targets of aberrant somatic hypermutation in lymphoma.
Khodabakhshi AH, Morin RD, Fejes AP, Mungall AJ, Mungall KL, Bolger-Munro M, Johnson NA, Connors JM, Gascoyne RD, Marra MA, Birol I, Jones SJ.
Khodabakhshi AH, et al.
Oncotarget. 2012 Nov;3(11):1308-19. doi: 10.18632/oncotarget.653.
Oncotarget. 2012.
PMID: 23131835
Free PMC article.
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Critical assessment of automated flow cytometry data analysis techniques.
Aghaeepour N, Finak G; FlowCAP Consortium; DREAM Consortium; Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH.
Aghaeepour N, et al.
Nat Methods. 2013 Mar;10(3):228-38. doi: 10.1038/nmeth.2365. Epub 2013 Feb 10.
Nat Methods. 2013.
PMID: 23396282
Free PMC article.
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Human variation database: an open-source database template for genomic discovery.
Fejes AP, Khodabakhshi AH, Birol I, Jones SJ.
Fejes AP, et al. Among authors: khodabakhshi ah.
Bioinformatics. 2011 Apr 15;27(8):1155-6. doi: 10.1093/bioinformatics/btr100. Epub 2011 Mar 2.
Bioinformatics. 2011.
PMID: 21367872
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Stable structure-approximating inverse protein folding in 2D hydrophobic-polar-cysteine (HPC) model.
Khodabakhshi AH, Manuch J, Rafiey A, Gupta A.
Khodabakhshi AH, et al.
J Comput Biol. 2009 Jan;16(1):19-30. doi: 10.1089/cmb.2008.0096.
J Comput Biol. 2009.
PMID: 19072580
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Inverse protein folding in 3D hexagonal prism lattice under HPC model.
Khodabakhshi AH, Manuch J, Rafiey A, Gupta A.
Khodabakhshi AH, et al.
J Comput Biol. 2009 Jun;16(6):769-802. doi: 10.1089/cmb.2008.0202.
J Comput Biol. 2009.
PMID: 19522663
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Metascape provides a biologist-oriented resource for the analysis of systems-level datasets.
Zhou Y, Zhou B, Pache L, Chang M, Khodabakhshi AH, Tanaseichuk O, Benner C, Chanda SK.
Zhou Y, et al. Among authors: khodabakhshi ah.
Nat Commun. 2019 Apr 3;10(1):1523. doi: 10.1038/s41467-019-09234-6.
Nat Commun. 2019.
PMID: 30944313
Free PMC article.
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