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Recent de novo origin of human protein-coding genes.
Knowles DG, McLysaght A. Knowles DG, et al. Genome Res. 2009 Oct;19(10):1752-9. doi: 10.1101/gr.095026.109. Epub 2009 Sep 2. Genome Res. 2009. PMID: 19726446 Free PMC article.
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, Carninci P, Brown JB, Lipovich L, Gonzalez JM, Thomas M, Davis CA, Shiekhattar R, Gingeras TR, Hubbard TJ, Notredame C, Harrow J, Guigó R. Derrien T, et al. Among authors: knowles dg. Genome Res. 2012 Sep;22(9):1775-89. doi: 10.1101/gr.132159.111. Genome Res. 2012. PMID: 22955988 Free PMC article.
Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia.
Ferreira PG, Jares P, Rico D, Gómez-López G, Martínez-Trillos A, Villamor N, Ecker S, González-Pérez A, Knowles DG, Monlong J, Johnson R, Quesada V, Djebali S, Papasaikas P, López-Guerra M, Colomer D, Royo C, Cazorla M, Pinyol M, Clot G, Aymerich M, Rozman M, Kulis M, Tamborero D, Gouin A, Blanc J, Gut M, Gut I, Puente XS, Pisano DG, Martin-Subero JI, López-Bigas N, López-Guillermo A, Valencia A, López-Otín C, Campo E, Guigó R. Ferreira PG, et al. Among authors: knowles dg. Genome Res. 2014 Feb;24(2):212-26. doi: 10.1101/gr.152132.112. Epub 2013 Nov 21. Genome Res. 2014. PMID: 24265505 Free PMC article.
Intron-centric estimation of alternative splicing from RNA-seq data.
Pervouchine DD, Knowles DG, Guigó R. Pervouchine DD, et al. Among authors: knowles dg. Bioinformatics. 2013 Jan 15;29(2):273-4. doi: 10.1093/bioinformatics/bts678. Epub 2012 Nov 21. Bioinformatics. 2013. PMID: 23172860 Free PMC article.
Grape RNA-Seq analysis pipeline environment.
Knowles DG, Röder M, Merkel A, Guigó R. Knowles DG, et al. Bioinformatics. 2013 Mar 1;29(5):614-21. doi: 10.1093/bioinformatics/btt016. Epub 2013 Jan 17. Bioinformatics. 2013. PMID: 23329413 Free PMC article.
Fast computation and applications of genome mappability.
Derrien T, Estellé J, Marco Sola S, Knowles DG, Raineri E, Guigó R, Ribeca P. Derrien T, et al. Among authors: knowles dg. PLoS One. 2012;7(1):e30377. doi: 10.1371/journal.pone.0030377. Epub 2012 Jan 19. PLoS One. 2012. PMID: 22276185 Free PMC article.
11 results