Koelle K - Search Results

1

Rates of coalescence for common epidemiological models at equilibrium.

Koelle K, Rasmussen DA. Koelle K, et al. J R Soc Interface. 2012 May 7;9(70):997-1007. doi: 10.1098/rsif.2011.0495. Epub 2011 Sep 15. J R Soc Interface. 2012. PMID: 21920961 Free PMC article.

2

Avian H7N9 influenza viruses are evolutionarily constrained by stochastic processes during replication and transmission in mammals.

Braun KM, Haddock Iii LA, Crooks CM, Barry GL, Lalli J, Neumann G, Watanabe T, Imai M, Yamayoshi S, Ito M, Moncla LH, Koelle K, Kawaoka Y, Friedrich TC. Braun KM, et al. Among authors: koelle k. Virus Evol. 2023 Jan 19;9(1):vead004. doi: 10.1093/ve/vead004. eCollection 2023. Virus Evol. 2023. PMID: 36814938 Free PMC article.

3

A two-tiered model for simulating the ecological and evolutionary dynamics of rapidly evolving viruses, with an application to influenza.

Koelle K, Khatri P, Kamradt M, Kepler TB. Koelle K, et al. J R Soc Interface. 2010 Sep 6;7(50):1257-74. doi: 10.1098/rsif.2010.0007. Epub 2010 Mar 24. J R Soc Interface. 2010. PMID: 20335193 Free PMC article.

4

A dimensionless number for understanding the evolutionary dynamics of antigenically variable RNA viruses.

Koelle K, Ratmann O, Rasmussen DA, Pasour V, Mattingly J. Koelle K, et al. Proc Biol Sci. 2011 Dec 22;278(1725):3723-30. doi: 10.1098/rspb.2011.0435. Epub 2011 May 4. Proc Biol Sci. 2011. PMID: 21543353 Free PMC article.

5

Inference for nonlinear epidemiological models using genealogies and time series.

Rasmussen DA, Ratmann O, Koelle K. Rasmussen DA, et al. Among authors: koelle k. PLoS Comput Biol. 2011 Aug;7(8):e1002136. doi: 10.1371/journal.pcbi.1002136. Epub 2011 Aug 25. PLoS Comput Biol. 2011. PMID: 21901082 Free PMC article.

6

The impact of host immune status on the within-host and population dynamics of antigenic immune escape.

Luo S, Reed M, Mattingly JC, Koelle K. Luo S, et al. Among authors: koelle k. J R Soc Interface. 2012 Oct 7;9(75):2603-13. doi: 10.1098/rsif.2012.0180. Epub 2012 May 9. J R Soc Interface. 2012. PMID: 22572027 Free PMC article.

7

The evolutionary dynamics of receptor binding avidity in influenza A: a mathematical model for a new antigenic drift hypothesis.

Yuan HY, Koelle K. Yuan HY, et al. Among authors: koelle k. Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120204. doi: 10.1098/rstb.2012.0204. Print 2013 Mar 19. Philos Trans R Soc Lond B Biol Sci. 2013. PMID: 23382426 Free PMC article.

8

Viral substitution rate variation can arise from the interplay between within-host and epidemiological dynamics.

Scholle SO, Ypma RJ, Lloyd AL, Koelle K. Scholle SO, et al. Among authors: koelle k. Am Nat. 2013 Oct;182(4):494-513. doi: 10.1086/672000. Epub 2013 Aug 20. Am Nat. 2013. PMID: 24021402

9

Reconciling phylodynamics with epidemiology: the case of dengue virus in southern Vietnam.

Rasmussen DA, Boni MF, Koelle K. Rasmussen DA, et al. Among authors: koelle k. Mol Biol Evol. 2014 Feb;31(2):258-71. doi: 10.1093/molbev/mst203. Epub 2013 Oct 22. Mol Biol Evol. 2014. PMID: 24150038 Free PMC article.

10

Influenza: Prediction is worth a shot.

Koelle K, Rasmussen DA. Koelle K, et al. Nature. 2014 Mar 6;507(7490):47-8. doi: 10.1038/nature13054. Epub 2014 Feb 26. Nature. 2014. PMID: 24572355 No abstract available.

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