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The closest BLAST hit is often not the nearest neighbor.
J Mol Evol. 2001 Jun;52(6):540-2. doi: 10.1007/s002390010184.
J Mol Evol. 2001.
PMID: 11443357
Codon bias and base composition are poor indicators of horizontally transferred genes.
Koski LB, Morton RA, Golding GB.
Koski LB, et al.
Mol Biol Evol. 2001 Mar;18(3):404-12. doi: 10.1093/oxfordjournals.molbev.a003816.
Mol Biol Evol. 2001.
PMID: 11230541
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Monoalleleic transcription of the insulin-like growth factor-II gene (Igf2) in chick embryos.
Koski LB, Sasaki E, Roberts RD, Gibson J, Etches RJ.
Koski LB, et al.
Mol Reprod Dev. 2000 Jul;56(3):345-52. doi: 10.1002/1098-2795(200007)56:3<345::AID-MRD3>3.0.CO;2-1.
Mol Reprod Dev. 2000.
PMID: 10862000
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EST databases and web tools for EST projects.
Shen YQ, O'Brien E, Koski L, Lang BF, Burger G.
Shen YQ, et al.
Methods Mol Biol. 2009;533:241-56. doi: 10.1007/978-1-60327-136-3_11.
Methods Mol Biol. 2009.
PMID: 19277569
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AutoFACT: an automatic functional annotation and classification tool.
Koski LB, Gray MW, Lang BF, Burger G.
Koski LB, et al.
BMC Bioinformatics. 2005 Jun 16;6:151. doi: 10.1186/1471-2105-6-151.
BMC Bioinformatics. 2005.
PMID: 15960857
Free PMC article.
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TBestDB: a taxonomically broad database of expressed sequence tags (ESTs).
O'Brien EA, Koski LB, Zhang Y, Yang L, Wang E, Gray MW, Burger G, Lang BF.
O'Brien EA, et al. Among authors: koski lb.
Nucleic Acids Res. 2007 Jan;35(Database issue):D445-51. doi: 10.1093/nar/gkl770.
Nucleic Acids Res. 2007.
PMID: 17202165
Free PMC article.
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Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans.
Sönnichsen B, Koski LB, Walsh A, Marschall P, Neumann B, Brehm M, Alleaume AM, Artelt J, Bettencourt P, Cassin E, Hewitson M, Holz C, Khan M, Lazik S, Martin C, Nitzsche B, Ruer M, Stamford J, Winzi M, Heinkel R, Röder M, Finell J, Häntsch H, Jones SJ, Jones M, Piano F, Gunsalus KC, Oegema K, Gönczy P, Coulson A, Hyman AA, Echeverri CJ.
Sönnichsen B, et al. Among authors: koski lb.
Nature. 2005 Mar 24;434(7032):462-9. doi: 10.1038/nature03353.
Nature. 2005.
PMID: 15791247
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