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Molecular profiling of human mammary gland links breast cancer risk to a p27(+) cell population with progenitor characteristics.
Choudhury S, Almendro V, Merino VF, Wu Z, Maruyama R, Su Y, Martins FC, Fackler MJ, Bessarabova M, Kowalczyk A, Conway T, Beresford-Smith B, Macintyre G, Cheng YK, Lopez-Bujanda Z, Kaspi A, Hu R, Robens J, Nikolskaya T, Haakensen VD, Schnitt SJ, Argani P, Ethington G, Panos L, Grant M, Clark J, Herlihy W, Lin SJ, Chew G, Thompson EW, Greene-Colozzi A, Richardson AL, Rosson GD, Pike M, Garber JE, Nikolsky Y, Blum JL, Au A, Hwang ES, Tamimi RM, Michor F, Haviv I, Liu XS, Sukumar S, Polyak K. Choudhury S, et al. Among authors: kowalczyk a. Cell Stem Cell. 2013 Jul 3;13(1):117-30. doi: 10.1016/j.stem.2013.05.004. Epub 2013 Jun 13. Cell Stem Cell. 2013. PMID: 23770079 Free PMC article.
Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium.
Maruyama R, Choudhury S, Kowalczyk A, Bessarabova M, Beresford-Smith B, Conway T, Kaspi A, Wu Z, Nikolskaya T, Merino VF, Lo PK, Liu XS, Nikolsky Y, Sukumar S, Haviv I, Polyak K. Maruyama R, et al. Among authors: kowalczyk a. PLoS Genet. 2011 Apr;7(4):e1001369. doi: 10.1371/journal.pgen.1001369. Epub 2011 Apr 21. PLoS Genet. 2011. PMID: 21533021 Free PMC article.
The poisson margin test for normalization-free significance analysis of NGS data.
Kowalczyk A, Bedo J, Conway T, Beresford-Smith B. Kowalczyk A, et al. J Comput Biol. 2011 Mar;18(3):391-400. doi: 10.1089/cmb.2010.0272. J Comput Biol. 2011. PMID: 21385042
In this article, we investigate a principled statistical procedure that eliminates the need for a normalization step. ...See Kowalczyk et al. ( 2009 ) for supplementary material....
In this article, we investigate a principled statistical procedure that eliminates the need for a normalization step. ...See …
Genome-wide analysis distinguishes hyperglycemia regulated epigenetic signatures of primary vascular cells.
Pirola L, Balcerczyk A, Tothill RW, Haviv I, Kaspi A, Lunke S, Ziemann M, Karagiannis T, Tonna S, Kowalczyk A, Beresford-Smith B, Macintyre G, Kelong M, Hongyu Z, Zhu J, El-Osta A. Pirola L, et al. Among authors: kowalczyk a. Genome Res. 2011 Oct;21(10):1601-15. doi: 10.1101/gr.116095.110. Epub 2011 Sep 2. Genome Res. 2011. PMID: 21890681 Free PMC article.
An expression-based site of origin diagnostic method designed for clinical application to cancer of unknown origin.
Tothill RW, Kowalczyk A, Rischin D, Bousioutas A, Haviv I, van Laar RK, Waring PM, Zalcberg J, Ward R, Biankin AV, Sutherland RL, Henshall SM, Fong K, Pollack JR, Bowtell DD, Holloway AJ. Tothill RW, et al. Among authors: kowalczyk a. Cancer Res. 2005 May 15;65(10):4031-40. doi: 10.1158/0008-5472.CAN-04-3617. Cancer Res. 2005. PMID: 15899792
704 results