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Cytoscape.js: a graph theory library for visualisation and analysis.
Franz M, Lopes CT, Huck G, Dong Y, Sumer O, Bader GD. Franz M, et al. Among authors: lopes ct. Bioinformatics. 2016 Jan 15;32(2):309-11. doi: 10.1093/bioinformatics/btv557. Epub 2015 Sep 28. Bioinformatics. 2016. PMID: 26415722 Free PMC article.
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function.
Warde-Farley D, Donaldson SL, Comes O, Zuberi K, Badrawi R, Chao P, Franz M, Grouios C, Kazi F, Lopes CT, Maitland A, Mostafavi S, Montojo J, Shao Q, Wright G, Bader GD, Morris Q. Warde-Farley D, et al. Among authors: lopes ct. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W214-20. doi: 10.1093/nar/gkq537. Nucleic Acids Res. 2010. PMID: 20576703 Free PMC article.
Cytoscape Web: an interactive web-based network browser.
Lopes CT, Franz M, Kazi F, Donaldson SL, Morris Q, Bader GD. Lopes CT, et al. Bioinformatics. 2010 Sep 15;26(18):2347-8. doi: 10.1093/bioinformatics/btq430. Epub 2010 Jul 23. Bioinformatics. 2010. PMID: 20656902 Free PMC article.
GeneMANIA prediction server 2013 update.
Zuberi K, Franz M, Rodriguez H, Montojo J, Lopes CT, Bader GD, Morris Q. Zuberi K, et al. Among authors: lopes ct. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W115-22. doi: 10.1093/nar/gkt533. Nucleic Acids Res. 2013. PMID: 23794635 Free PMC article.
The Cytoscape app article collection.
Pico AR, Bader GD, Demchak B, Guitart Pla O, Hull T, Longabaugh W, Lopes C, Lotia S, Molenaar P, Montojo J, Morris JH, Ono K, Schwikowski B, Welker D, Ideker T. Pico AR, et al. F1000Res. 2014 Jul 1;3:138. doi: 10.12688/f1000research.4642.1. eCollection 2014. F1000Res. 2014. PMID: 25580224 Free PMC article.
GeneMANIA update 2018.
Franz M, Rodriguez H, Lopes C, Zuberi K, Montojo J, Bader GD, Morris Q. Franz M, et al. Nucleic Acids Res. 2018 Jul 2;46(W1):W60-W64. doi: 10.1093/nar/gky311. Nucleic Acids Res. 2018. PMID: 29912392 Free PMC article.
The Cytoscape Automation app article collection.
Demchak B, Otasek D, Pico AR, Bader GD, Ono K, Settle B, Sage E, Morris JH, Longabaugh W, Lopes C, Kucera M, Treister A, Schwikowski B, Molenaar P, Ideker T. Demchak B, et al. F1000Res. 2018 Jun 20;7:800. doi: 10.12688/f1000research.15355.1. eCollection 2018. F1000Res. 2018. PMID: 29983926 Free PMC article.
94 results