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Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data.
Fernandez-Cuesta L, Sun R, Menon R, George J, Lorenz S, Meza-Zepeda LA, Peifer M, Plenker D, Heuckmann JM, Leenders F, Zander T, Dahmen I, Koker M, Schöttle J, Ullrich RT, Altmüller J, Becker C, Nürnberg P, Seidel H, Böhm D, Göke F, Ansén S, Russell PA, Wright GM, Wainer Z, Solomon B, Petersen I, Clement JH, Sänger J, Brustugun OT, Helland Å, Solberg S, Lund-Iversen M, Buettner R, Wolf J, Brambilla E, Vingron M, Perner S, Haas SA, Thomas RK. Fernandez-Cuesta L, et al. Among authors: lorenz s. Genome Biol. 2015 Jan 5;16(1):7. doi: 10.1186/s13059-014-0558-0. Genome Biol. 2015. PMID: 25650807 Free PMC article.
Deep Sequencing the MicroRNA Transcriptome in Colorectal Cancer.
Schee K, Lorenz S, Worren MM, Günther CC, Holden M, Hovig E, Fodstad O, Meza-Zepeda LA, Flatmark K. Schee K, et al. Among authors: lorenz s. PLoS One. 2013 Jun 18;8(6):e66165. doi: 10.1371/journal.pone.0066165. Print 2013. PLoS One. 2013. PMID: 23824282 Free PMC article.
Unscrambling the genomic chaos of osteosarcoma reveals extensive transcript fusion, recurrent rearrangements and frequent novel TP53 aberrations.
Lorenz S, Barøy T, Sun J, Nome T, Vodák D, Bryne JC, Håkelien AM, Fernandez-Cuesta L, Möhlendick B, Rieder H, Szuhai K, Zaikova O, Ahlquist TC, Thomassen GO, Skotheim RI, Lothe RA, Tarpey PS, Campbell P, Flanagan A, Myklebost O, Meza-Zepeda LA. Lorenz S, et al. Oncotarget. 2016 Feb 2;7(5):5273-88. doi: 10.18632/oncotarget.6567. Oncotarget. 2016. PMID: 26672768 Free PMC article.
High number of kinome-mutations in non-small cell lung cancer is associated with reduced immune response and poor relapse-free survival.
Helland Å, Brustugun OT, Nakken S, Halvorsen AR, Dønnem T, Bremnes R, Busund LT, Sun J, Lorenz S, Solberg SK, Jørgensen LH, Vodak D, Myklebost O, Hovig E, Meza-Zepeda LA. Helland Å, et al. Among authors: lorenz s. Int J Cancer. 2017 Jul 1;141(1):184-190. doi: 10.1002/ijc.30726. Epub 2017 Apr 21. Int J Cancer. 2017. PMID: 28387924 Free PMC article.
Performance comparison of four exome capture systems for deep sequencing.
Chilamakuri CS, Lorenz S, Madoui MA, Vodák D, Sun J, Hovig E, Myklebost O, Meza-Zepeda LA. Chilamakuri CS, et al. Among authors: lorenz s. BMC Genomics. 2014 Jun 9;15(1):449. doi: 10.1186/1471-2164-15-449. BMC Genomics. 2014. PMID: 24912484 Free PMC article.
Sample-Index Misassignment Impacts Tumour Exome Sequencing.
Vodák D, Lorenz S, Nakken S, Aasheim LB, Holte H, Bai B, Myklebost O, Meza-Zepeda LA, Hovig E. Vodák D, et al. Among authors: lorenz s. Sci Rep. 2018 Mar 28;8(1):5307. doi: 10.1038/s41598-018-23563-4. Sci Rep. 2018. PMID: 29593270 Free PMC article.
378 results