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The design and implementation of the immune epitope database and analysis resource.
Peters B, Sidney J, Bourne P, Bui HH, Buus S, Doh G, Fleri W, Kronenberg M, Kubo R, Lund O, Nemazee D, Ponomarenko JV, Sathiamurthy M, Schoenberger SP, Stewart S, Surko P, Way S, Wilson S, Sette A. Peters B, et al. Among authors: lund o. Immunogenetics. 2005 Jun;57(5):326-36. doi: 10.1007/s00251-005-0803-5. Epub 2005 May 14. Immunogenetics. 2005. PMID: 15895191 Free PMC article.
Immune epitope database analysis resource (IEDB-AR).
Zhang Q, Wang P, Kim Y, Haste-Andersen P, Beaver J, Bourne PE, Bui HH, Buus S, Frankild S, Greenbaum J, Lund O, Lundegaard C, Nielsen M, Ponomarenko J, Sette A, Zhu Z, Peters B. Zhang Q, et al. Among authors: lund o. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W513-8. doi: 10.1093/nar/gkn254. Epub 2008 May 31. Nucleic Acids Res. 2008. PMID: 18515843 Free PMC article.
Immune epitope database analysis resource.
Kim Y, Ponomarenko J, Zhu Z, Tamang D, Wang P, Greenbaum J, Lundegaard C, Sette A, Lund O, Bourne PE, Nielsen M, Peters B. Kim Y, et al. Among authors: lund o. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W525-30. doi: 10.1093/nar/gks438. Epub 2012 May 18. Nucleic Acids Res. 2012. PMID: 22610854 Free PMC article.
The immune epitope database and analysis resource: from vision to blueprint.
Peters B, Sidney J, Bourne P, Bui HH, Buus S, Doh G, Fleri W, Kronenberg M, Kubo R, Lund O, Nemazee D, Ponomarenko JV, Sathiamurthy M, Schoenberger S, Stewart S, Surko P, Way S, Wilson S, Sette A. Peters B, et al. Among authors: lund o. PLoS Biol. 2005 Mar;3(3):e91. doi: 10.1371/journal.pbio.0030091. PLoS Biol. 2005. PMID: 15760272 Free PMC article.
A community resource benchmarking predictions of peptide binding to MHC-I molecules.
Peters B, Bui HH, Frankild S, Nielson M, Lundegaard C, Kostem E, Basch D, Lamberth K, Harndahl M, Fleri W, Wilson SS, Sidney J, Lund O, Buus S, Sette A. Peters B, et al. Among authors: lund o. PLoS Comput Biol. 2006 Jun 9;2(6):e65. doi: 10.1371/journal.pcbi.0020065. Epub 2006 Jun 9. PLoS Comput Biol. 2006. PMID: 16789818 Free PMC article.
Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools.
Greenbaum JA, Andersen PH, Blythe M, Bui HH, Cachau RE, Crowe J, Davies M, Kolaskar AS, Lund O, Morrison S, Mumey B, Ofran Y, Pellequer JL, Pinilla C, Ponomarenko JV, Raghava GP, van Regenmortel MH, Roggen EL, Sette A, Schlessinger A, Sollner J, Zand M, Peters B. Greenbaum JA, et al. Among authors: lund o. J Mol Recognit. 2007 Mar-Apr;20(2):75-82. doi: 10.1002/jmr.815. J Mol Recognit. 2007. PMID: 17205610 Review.
Automated benchmarking of peptide-MHC class I binding predictions.
Trolle T, Metushi IG, Greenbaum JA, Kim Y, Sidney J, Lund O, Sette A, Peters B, Nielsen M. Trolle T, et al. Among authors: lund o. Bioinformatics. 2015 Jul 1;31(13):2174-81. doi: 10.1093/bioinformatics/btv123. Epub 2015 Feb 25. Bioinformatics. 2015. PMID: 25717196 Free PMC article.
NetMHCpan, a method for MHC class I binding prediction beyond humans.
Hoof I, Peters B, Sidney J, Pedersen LE, Sette A, Lund O, Buus S, Nielsen M. Hoof I, et al. Among authors: lund o. Immunogenetics. 2009 Jan;61(1):1-13. doi: 10.1007/s00251-008-0341-z. Epub 2008 Nov 12. Immunogenetics. 2009. PMID: 19002680 Free PMC article.
Peptide binding predictions for HLA DR, DP and DQ molecules.
Wang P, Sidney J, Kim Y, Sette A, Lund O, Nielsen M, Peters B. Wang P, et al. Among authors: lund o. BMC Bioinformatics. 2010 Nov 22;11:568. doi: 10.1186/1471-2105-11-568. BMC Bioinformatics. 2010. PMID: 21092157 Free PMC article.
458 results