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A community resource benchmarking predictions of peptide binding to MHC-I molecules.
Peters B, Bui HH, Frankild S, Nielson M, Lundegaard C, Kostem E, Basch D, Lamberth K, Harndahl M, Fleri W, Wilson SS, Sidney J, Lund O, Buus S, Sette A. Peters B, et al. Among authors: lund o. PLoS Comput Biol. 2006 Jun 9;2(6):e65. doi: 10.1371/journal.pcbi.0020065. Epub 2006 Jun 9. PLoS Comput Biol. 2006. PMID: 16789818 Free PMC article.
Immune epitope database analysis resource (IEDB-AR).
Zhang Q, Wang P, Kim Y, Haste-Andersen P, Beaver J, Bourne PE, Bui HH, Buus S, Frankild S, Greenbaum J, Lund O, Lundegaard C, Nielsen M, Ponomarenko J, Sette A, Zhu Z, Peters B. Zhang Q, et al. Among authors: lund o. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W513-8. doi: 10.1093/nar/gkn254. Epub 2008 May 31. Nucleic Acids Res. 2008. PMID: 18515843 Free PMC article.
Peptide binding predictions for HLA DR, DP and DQ molecules.
Wang P, Sidney J, Kim Y, Sette A, Lund O, Nielsen M, Peters B. Wang P, et al. Among authors: lund o. BMC Bioinformatics. 2010 Nov 22;11:568. doi: 10.1186/1471-2105-11-568. BMC Bioinformatics. 2010. PMID: 21092157 Free PMC article.
Automated benchmarking of peptide-MHC class I binding predictions.
Trolle T, Metushi IG, Greenbaum JA, Kim Y, Sidney J, Lund O, Sette A, Peters B, Nielsen M. Trolle T, et al. Among authors: lund o. Bioinformatics. 2015 Jul 1;31(13):2174-81. doi: 10.1093/bioinformatics/btv123. Epub 2015 Feb 25. Bioinformatics. 2015. PMID: 25717196 Free PMC article.
NetMHCpan, a method for MHC class I binding prediction beyond humans.
Hoof I, Peters B, Sidney J, Pedersen LE, Sette A, Lund O, Buus S, Nielsen M. Hoof I, et al. Among authors: lund o. Immunogenetics. 2009 Jan;61(1):1-13. doi: 10.1007/s00251-008-0341-z. Epub 2008 Nov 12. Immunogenetics. 2009. PMID: 19002680 Free PMC article.
458 results