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Nanopore sequencing and assembly of a human genome with ultra-long reads.
Jain M, Koren S, Miga KH, Quick J, Rand AC, Sasani TA, Tyson JR, Beggs AD, Dilthey AT, Fiddes IT, Malla S, Marriott H, Nieto T, O'Grady J, Olsen HE, Pedersen BS, Rhie A, Richardson H, Quinlan AR, Snutch TP, Tee L, Paten B, Phillippy AM, Simpson JT, Loman NJ, Loose M. Jain M, et al. Among authors: malla s. Nat Biotechnol. 2018 Apr;36(4):338-345. doi: 10.1038/nbt.4060. Epub 2018 Jan 29. Nat Biotechnol. 2018. PMID: 29431738 Free PMC article.
Real-time selective sequencing using nanopore technology.
Loose M, Malla S, Stout M. Loose M, et al. Among authors: malla s. Nat Methods. 2016 Sep;13(9):751-4. doi: 10.1038/nmeth.3930. Epub 2016 Jul 25. Nat Methods. 2016. PMID: 27454285 Free PMC article.
MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry.
Jain M, Tyson JR, Loose M, Ip CLC, Eccles DA, O'Grady J, Malla S, Leggett RM, Wallerman O, Jansen HJ, Zalunin V, Birney E, Brown BL, Snutch TP, Olsen HE; MinION Analysis and Reference Consortium. Jain M, et al. Among authors: malla s. F1000Res. 2017 May 31;6:760. doi: 10.12688/f1000research.11354.1. eCollection 2017. F1000Res. 2017. PMID: 28794860 Free PMC article.
Accelerated growth in the absence of DNA replication origins.
Hawkins M, Malla S, Blythe MJ, Nieduszynski CA, Allers T. Hawkins M, et al. Among authors: malla s. Nature. 2013 Nov 28;503(7477):544-547. doi: 10.1038/nature12650. Epub 2013 Nov 3. Nature. 2013. PMID: 24185008 Free PMC article.
The dynamics of genome replication using deep sequencing.
Müller CA, Hawkins M, Retkute R, Malla S, Wilson R, Blythe MJ, Nakato R, Komata M, Shirahige K, de Moura AP, Nieduszynski CA. Müller CA, et al. Among authors: malla s. Nucleic Acids Res. 2014 Jan;42(1):e3. doi: 10.1093/nar/gkt878. Epub 2013 Oct 1. Nucleic Acids Res. 2014. PMID: 24089142 Free PMC article.
High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome.
Liti G, Nguyen Ba AN, Blythe M, Müller CA, Bergström A, Cubillos FA, Dafhnis-Calas F, Khoshraftar S, Malla S, Mehta N, Siow CC, Warringer J, Moses AM, Louis EJ, Nieduszynski CA. Liti G, et al. Among authors: malla s. BMC Genomics. 2013 Jan 31;14:69. doi: 10.1186/1471-2164-14-69. BMC Genomics. 2013. PMID: 23368932 Free PMC article.
The role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger.
van Munster JM, Daly P, Delmas S, Pullan ST, Blythe MJ, Malla S, Kokolski M, Noltorp ECM, Wennberg K, Fetherston R, Beniston R, Yu X, Dupree P, Archer DB. van Munster JM, et al. Among authors: malla s. Fungal Genet Biol. 2014 Nov;72:34-47. doi: 10.1016/j.fgb.2014.04.006. Epub 2014 Apr 29. Fungal Genet Biol. 2014. PMID: 24792495 Free PMC article.
256 results