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Page 1
Discovery Proteomics for COVID-19: Where We Are Now.
J Proteome Res. 2021 Oct 1;20(10):4627-4639. doi: 10.1021/acs.jproteome.1c00475. Epub 2021 Sep 22.
J Proteome Res. 2021.
PMID: 34550702
Free PMC article.
Review.
Answer ALS, a large-scale resource for sporadic and familial ALS combining clinical and multi-omics data from induced pluripotent cell lines.
Baxi EG, Thompson T, Li J, Kaye JA, Lim RG, Wu J, Ramamoorthy D, Lima L, Vaibhav V, Matlock A, Frank A, Coyne AN, Landin B, Ornelas L, Mosmiller E, Thrower S, Farr SM, Panther L, Gomez E, Galvez E, Perez D, Meepe I, Lei S, Mandefro B, Trost H, Pinedo L, Banuelos MG, Liu C, Moran R, Garcia V, Workman M, Ho R, Wyman S, Roggenbuck J, Harms MB, Stocksdale J, Miramontes R, Wang K, Venkatraman V, Holewenski R, Sundararaman N, Pandey R, Manalo DM, Donde A, Huynh N, Adam M, Wassie BT, Vertudes E, Amirani N, Raja K, Thomas R, Hayes L, Lenail A, Cerezo A, Luppino S, Farrar A, Pothier L, Prina C, Morgan T, Jamil A, Heintzman S, Jockel-Balsarotti J, Karanja E, Markway J, McCallum M, Joslin B, Alibazoglu D, Kolb S, Ajroud-Driss S, Baloh R, Heitzman D, Miller T, Glass JD, Patel-Murray NL, Yu H, Sinani E, Vigneswaran P, Sherman AV, Ahmad O, Roy P, Beavers JC, Zeiler S, Krakauer JW, Agurto C, Cecchi G, Bellard M, Raghav Y, Sachs K, Ehrenberger T, Bruce E, Cudkowicz ME, Maragakis N, Norel R, Van Eyk JE, Finkbeiner S, Berry J, Sareen D, Thompson LM, Fraenkel E, Svendsen CN, Rothstein JD.
Baxi EG, et al. Among authors: manalo dm.
Nat Neurosci. 2022 Feb;25(2):226-237. doi: 10.1038/s41593-021-01006-0. Epub 2022 Feb 3.
Nat Neurosci. 2022.
PMID: 35115730
Free PMC article.
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NeuroLINCS Proteomics: Defining human-derived iPSC proteomes and protein signatures of pluripotency.
Matlock AD, Vaibhav V, Holewinski R, Venkatraman V, Dardov V, Manalo DM, Shelley B, Ornelas L, Banuelos M, Mandefro B, Escalante-Chong R, Li J, Finkbeiner S, Fraenkel E, Rothstein J, Thompson L, Sareen D, Svendsen CN; NIH NeuroLINCS Consortium; Van Eyk JE.
Matlock AD, et al. Among authors: manalo dm.
Sci Data. 2023 Jan 11;10(1):24. doi: 10.1038/s41597-022-01687-7.
Sci Data. 2023.
PMID: 36631473
Free PMC article.
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Disease related changes in ATAC-seq of iPSC-derived motor neuron lines from ALS patients and controls.
Tsitkov S, Valentine K, Kozareva V, Donde A, Frank A, Lei S; Answer ALS Consortium; E Van Eyk J, Finkbeiner S, Rothstein JD, Thompson LM, Sareen D, Svendsen CN, Fraenkel E.
Tsitkov S, et al.
Nat Commun. 2024 May 2;15(1):3606. doi: 10.1038/s41467-024-47758-8.
Nat Commun. 2024.
PMID: 38697975
Free PMC article.
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Standardized Workflow for Precise Mid- and High-Throughput Proteomics of Blood Biofluids.
Mc Ardle A, Binek A, Moradian A, Chazarin Orgel B, Rivas A, Washington KE, Phebus C, Manalo DM, Go J, Venkatraman V, Coutelin Johnson CW, Fu Q, Cheng S, Raedschelders K, Fert-Bober J, Pennington SR, Murray CI, Van Eyk JE.
Mc Ardle A, et al. Among authors: manalo dm.
Clin Chem. 2022 Mar 4;68(3):450-460. doi: 10.1093/clinchem/hvab202.
Clin Chem. 2022.
PMID: 34687543
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Identifying patterns in amyotrophic lateral sclerosis progression from sparse longitudinal data.
Ramamoorthy D, Severson K, Ghosh S, Sachs K; Answer ALS; Glass JD, Fournier CN; Pooled Resource Open-Access ALS Clinical Trials Consortium; ALS/MND Natural History Consortium; Herrington TM, Berry JD, Ng K, Fraenkel E.
Ramamoorthy D, et al.
Nat Comput Sci. 2022 Sep;2(9):605-616. doi: 10.1038/s43588-022-00299-w. Epub 2022 Sep 8.
Nat Comput Sci. 2022.
PMID: 38177466
Free PMC article.
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