Mariño-Ramírez L - Search Results

1

HMGN1 modulates nucleosome occupancy and DNase I hypersensitivity at the CpG island promoters of embryonic stem cells.

Deng T, Zhu ZI, Zhang S, Leng F, Cherukuri S, Hansen L, Mariño-Ramírez L, Meshorer E, Landsman D, Bustin M. Deng T, et al. Mol Cell Biol. 2013 Aug;33(16):3377-89. doi: 10.1128/MCB.00435-13. Epub 2013 Jun 17. Mol Cell Biol. 2013. PMID: 23775126 Free PMC article.

2

Comorbidities and ethnic health disparities in the UK biobank.

Teagle WL, Norris ET, Rishishwar L, Nagar SD, Jordan IK, Mariño-Ramírez L. Teagle WL, et al. JAMIA Open. 2022 Jul 11;5(3):ooac057. doi: 10.1093/jamiaopen/ooac057. eCollection 2022 Oct. JAMIA Open. 2022. PMID: 36313969 Free PMC article.

3

Statistical analysis of over-represented words in human promoter sequences.

Mariño-Ramírez L, Spouge JL, Kanga GC, Landsman D. Mariño-Ramírez L, et al. Nucleic Acids Res. 2004 Feb 12;32(3):949-58. doi: 10.1093/nar/gkh246. Print 2004. Nucleic Acids Res. 2004. PMID: 14963262 Free PMC article.

4

Conservation and coevolution in the scale-free human gene coexpression network.

Jordan IK, Mariño-Ramírez L, Wolf YI, Koonin EV. Jordan IK, et al. Mol Biol Evol. 2004 Nov;21(11):2058-70. doi: 10.1093/molbev/msh222. Epub 2004 Jul 28. Mol Biol Evol. 2004. PMID: 15282333

5

Alignments anchored on genomic landmarks can aid in the identification of regulatory elements.

Tharakaraman K, Mariño-Ramírez L, Sheetlin S, Landsman D, Spouge JL. Tharakaraman K, et al. Bioinformatics. 2005 Jun;21 Suppl 1(Suppl 1):i440-8. doi: 10.1093/bioinformatics/bti1028. Bioinformatics. 2005. PMID: 15961489 Free PMC article.

6

Transposable elements donate lineage-specific regulatory sequences to host genomes.

Mariño-Ramírez L, Lewis KC, Landsman D, Jordan IK. Mariño-Ramírez L, et al. Cytogenet Genome Res. 2005;110(1-4):333-41. doi: 10.1159/000084965. Cytogenet Genome Res. 2005. PMID: 16093685 Free PMC article. Review.

7

Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements.

Eriksson PR, Mendiratta G, McLaughlin NB, Wolfsberg TG, Mariño-Ramírez L, Pompa TA, Jainerin M, Landsman D, Shen CH, Clark DJ. Eriksson PR, et al. Mol Cell Biol. 2005 Oct;25(20):9127-37. doi: 10.1128/MCB.25.20.9127-9137.2005. Mol Cell Biol. 2005. PMID: 16199888 Free PMC article.

8

Histone structure and nucleosome stability.

Mariño-Ramírez L, Kann MG, Shoemaker BA, Landsman D. Mariño-Ramírez L, et al. Expert Rev Proteomics. 2005 Oct;2(5):719-29. doi: 10.1586/14789450.2.5.719. Expert Rev Proteomics. 2005. PMID: 16209651 Free PMC article. Review.

9

The Histone Database: a comprehensive resource for histones and histone fold-containing proteins.

Mariño-Ramírez L, Hsu B, Baxevanis AD, Landsman D. Mariño-Ramírez L, et al. Proteins. 2006 Mar 1;62(4):838-42. doi: 10.1002/prot.20814. Proteins. 2006. PMID: 16345076 Free PMC article.

10

Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements.

Tharakaraman K, Mariño-Ramírez L, Sheetlin SL, Landsman D, Spouge JL. Tharakaraman K, et al. BMC Bioinformatics. 2006 Sep 8;7:408. doi: 10.1186/1471-2105-7-408. BMC Bioinformatics. 2006. PMID: 16961919 Free PMC article.

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