McCloskey RM - Search Results

1

Joy JB, Liang RH, McCloskey RM, Nguyen T, Poon AF. Joy JB, et al. Among authors: mccloskey rm. PLoS Comput Biol. 2016 Jul 12;12(7):e1004763. doi: 10.1371/journal.pcbi.1004763. eCollection 2016 Jul. PLoS Comput Biol. 2016. PMID: 27404731 Free PMC article. No abstract available.

2

Mapping the shapes of phylogenetic trees from human and zoonotic RNA viruses.

Poon AF, Walker LW, Murray H, McCloskey RM, Harrigan PR, Liang RH. Poon AF, et al. Among authors: mccloskey rm. PLoS One. 2013 Nov 1;8(11):e78122. doi: 10.1371/journal.pone.0078122. eCollection 2013. PLoS One. 2013. PMID: 24223766 Free PMC article.

3

An evaluation of phylogenetic methods for reconstructing transmitted HIV variants using longitudinal clonal HIV sequence data.

McCloskey RM, Liang RH, Harrigan PR, Brumme ZL, Poon AF. McCloskey RM, et al. J Virol. 2014 Jun;88(11):6181-94. doi: 10.1128/JVI.00483-14. Epub 2014 Mar 19. J Virol. 2014. PMID: 24648453 Free PMC article.

4

Global origin and transmission of hepatitis C virus nonstructural protein 3 Q80K polymorphism.

McCloskey RM, Liang RH, Joy JB, Krajden M, Montaner JS, Harrigan PR, Poon AF. McCloskey RM, et al. J Infect Dis. 2015 Apr 15;211(8):1288-95. doi: 10.1093/infdis/jiu613. Epub 2014 Nov 10. J Infect Dis. 2015. PMID: 25389307

5

The spread of hepatitis C virus genotype 1a in North America: a retrospective phylogenetic study.

Joy JB, McCloskey RM, Nguyen T, Liang RH, Khudyakov Y, Olmstead A, Krajden M, Ward JW, Harrigan PR, Montaner JSG, Poon AFY. Joy JB, et al. Among authors: mccloskey rm. Lancet Infect Dis. 2016 Jun;16(6):698-702. doi: 10.1016/S1473-3099(16)00124-9. Epub 2016 Mar 30. Lancet Infect Dis. 2016. PMID: 27039040 Free PMC article.

6

Reconstructing contact network parameters from viral phylogenies.

McCloskey RM, Liang RH, Poon AF. McCloskey RM, et al. Virus Evol. 2016 Oct 30;2(2):vew029. doi: 10.1093/ve/vew029. eCollection 2016 Jul. Virus Evol. 2016. PMID: 27818787 Free PMC article.

7

A model-based clustering method to detect infectious disease transmission outbreaks from sequence variation.

McCloskey RM, Poon AFY. McCloskey RM, et al. PLoS Comput Biol. 2017 Nov 13;13(11):e1005868. doi: 10.1371/journal.pcbi.1005868. eCollection 2017 Nov. PLoS Comput Biol. 2017. PMID: 29131825 Free PMC article.

8

Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing.

Liang RH, Mo T, Dong W, Lee GQ, Swenson LC, McCloskey RM, Woods CK, Brumme CJ, Ho CK, Schinkel J, Joy JB, Harrigan PR, Poon AF. Liang RH, et al. Among authors: mccloskey rm. Nucleic Acids Res. 2014 Jul;42(12):e98. doi: 10.1093/nar/gku355. Epub 2014 May 7. Nucleic Acids Res. 2014. PMID: 24810852 Free PMC article.

9

Differential evolution of a CXCR4-using HIV-1 strain in CCR5wt/wt and CCR5∆32/∆32 hosts revealed by longitudinal deep sequencing and phylogenetic reconstruction.

Le AQ, Taylor J, Dong W, McCloskey R, Woods C, Danroth R, Hayashi K, Milloy MJ, Poon AF, Brumme ZL. Le AQ, et al. Sci Rep. 2015 Dec 3;5:17607. doi: 10.1038/srep17607. Sci Rep. 2015. PMID: 26631642 Free PMC article.

10

Ability of HIV-1 Nef to downregulate CD4 and HLA class I differs among viral subtypes.

Mann JK, Byakwaga H, Kuang XT, Le AQ, Brumme CJ, Mwimanzi P, Omarjee S, Martin E, Lee GQ, Baraki B, Danroth R, McCloskey R, Muzoora C, Bangsberg DR, Hunt PW, Goulder PJ, Walker BD, Harrigan PR, Martin JN, Ndung'u T, Brockman MA, Brumme ZL. Mann JK, et al. Retrovirology. 2013 Sep 16;10:100. doi: 10.1186/1742-4690-10-100. Retrovirology. 2013. PMID: 24041011 Free PMC article.

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