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Near-optimal probabilistic RNA-seq quantification.
Bray NL, Pimentel H, Melsted P, Pachter L. Bray NL, et al. Among authors: melsted p. Nat Biotechnol. 2016 May;34(5):525-7. doi: 10.1038/nbt.3519. Epub 2016 Apr 4. Nat Biotechnol. 2016. PMID: 27043002
Erratum: Near-optimal probabilistic RNA-seq quantification.
Bray NL, Pimentel H, Melsted P, Pachter L. Bray NL, et al. Among authors: melsted p. Nat Biotechnol. 2016 Aug 9;34(8):888. doi: 10.1038/nbt0816-888d. Nat Biotechnol. 2016. PMID: 27504780 No abstract available.
Pseudoalignment for metagenomic read assignment.
Schaeffer L, Pimentel H, Bray N, Melsted P, Pachter L. Schaeffer L, et al. Among authors: melsted p. Bioinformatics. 2017 Jul 15;33(14):2082-2088. doi: 10.1093/bioinformatics/btx106. Bioinformatics. 2017. PMID: 28334086 Free PMC article.
Graphtyper enables population-scale genotyping using pangenome graphs.
Eggertsson HP, Jonsson H, Kristmundsdottir S, Hjartarson E, Kehr B, Masson G, Zink F, Hjorleifsson KE, Jonasdottir A, Jonasdottir A, Jonsdottir I, Gudbjartsson DF, Melsted P, Stefansson K, Halldorsson BV. Eggertsson HP, et al. Among authors: melsted p. Nat Genet. 2017 Nov;49(11):1654-1660. doi: 10.1038/ng.3964. Epub 2017 Sep 25. Nat Genet. 2017. PMID: 28945251
The barcode, UMI, set format and BUStools.
Melsted P, Ntranos V, Pachter L. Melsted P, et al. Bioinformatics. 2019 Nov 1;35(21):4472-4473. doi: 10.1093/bioinformatics/btz279. Bioinformatics. 2019. PMID: 31073610
Modular, efficient and constant-memory single-cell RNA-seq preprocessing.
Melsted P, Booeshaghi AS, Liu L, Gao F, Lu L, Min KHJ, da Veiga Beltrame E, Hjörleifsson KE, Gehring J, Pachter L. Melsted P, et al. Nat Biotechnol. 2021 Jul;39(7):813-818. doi: 10.1038/s41587-021-00870-2. Epub 2021 Apr 1. Nat Biotechnol. 2021. PMID: 33795888
53 results