Mitchell JB - Search Results

1

MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms.

Holliday GL, Almonacid DE, Bartlett GJ, O'Boyle NM, Torrance JW, Murray-Rust P, Mitchell JB, Thornton JM. Holliday GL, et al. Among authors: mitchell jb. Nucleic Acids Res. 2007 Jan;35(Database issue):D515-20. doi: 10.1093/nar/gkl774. Epub 2006 Nov 1. Nucleic Acids Res. 2007. PMID: 17082206 Free PMC article.

2

MACiE: a database of enzyme reaction mechanisms.

Holliday GL, Bartlett GJ, Almonacid DE, O'Boyle NM, Murray-Rust P, Thornton JM, Mitchell JB. Holliday GL, et al. Among authors: mitchell jb. Bioinformatics. 2005 Dec 1;21(23):4315-6. doi: 10.1093/bioinformatics/bti693. Epub 2005 Sep 27. Bioinformatics. 2005. PMID: 16188925 Free PMC article.

3

Using reaction mechanism to measure enzyme similarity.

O'Boyle NM, Holliday GL, Almonacid DE, Mitchell JB. O'Boyle NM, et al. Among authors: mitchell jb. J Mol Biol. 2007 May 18;368(5):1484-99. doi: 10.1016/j.jmb.2007.02.065. Epub 2007 Mar 2. J Mol Biol. 2007. PMID: 17400244 Free PMC article.

4

The geometry of interactions between catalytic residues and their substrates.

Torrance JW, Holliday GL, Mitchell JB, Thornton JM. Torrance JW, et al. Among authors: mitchell jb. J Mol Biol. 2007 Jun 15;369(4):1140-52. doi: 10.1016/j.jmb.2007.03.055. Epub 2007 Mar 24. J Mol Biol. 2007. PMID: 17466330

5

The chemistry of protein catalysis.

Holliday GL, Almonacid DE, Mitchell JB, Thornton JM. Holliday GL, et al. Among authors: mitchell jb. J Mol Biol. 2007 Oct 5;372(5):1261-77. doi: 10.1016/j.jmb.2007.07.034. Epub 2007 Aug 2. J Mol Biol. 2007. PMID: 17727879

6

Understanding the functional roles of amino acid residues in enzyme catalysis.

Holliday GL, Mitchell JB, Thornton JM. Holliday GL, et al. Among authors: mitchell jb. J Mol Biol. 2009 Jul 17;390(3):560-77. doi: 10.1016/j.jmb.2009.05.015. Epub 2009 May 15. J Mol Biol. 2009. PMID: 19447117

7

Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function.

Almonacid DE, Yera ER, Mitchell JB, Babbitt PC. Almonacid DE, et al. Among authors: mitchell jb. PLoS Comput Biol. 2010 Mar 12;6(3):e1000700. doi: 10.1371/journal.pcbi.1000700. PLoS Comput Biol. 2010. PMID: 20300652 Free PMC article.

8

Characterizing the complexity of enzymes on the basis of their mechanisms and structures with a bio-computational analysis.

Holliday GL, Fischer JD, Mitchell JB, Thornton JM. Holliday GL, et al. Among authors: mitchell jb. FEBS J. 2011 Oct;278(20):3835-45. doi: 10.1111/j.1742-4658.2011.08190.x. Epub 2011 Jun 13. FEBS J. 2011. PMID: 21605342 Free PMC article. Review.

9

Chemistry in bioinformatics.

Murray-Rust P, Mitchell JB, Rzepa HS. Murray-Rust P, et al. Among authors: mitchell jb. BMC Bioinformatics. 2005 Jun 7;6:141. doi: 10.1186/1471-2105-6-141. BMC Bioinformatics. 2005. PMID: 15941476 Free PMC article.

10

Random forest models to predict aqueous solubility.

Palmer DS, O'Boyle NM, Glen RC, Mitchell JB. Palmer DS, et al. Among authors: mitchell jb. J Chem Inf Model. 2007 Jan-Feb;47(1):150-8. doi: 10.1021/ci060164k. J Chem Inf Model. 2007. PMID: 17238260

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