Mohammed Y - Search Results

1

Reinspection of a Clinical Proteomics Tumor Analysis Consortium (CPTAC) Dataset with Cloud Computing Reveals Abundant Post-Translational Modifications and Protein Sequence Variants.

Prakash A, Taylor L, Varkey M, Hoxie N, Mohammed Y, Goo YA, Peterman S, Moghekar A, Yuan Y, Glaros T, Steele JR, Faridi P, Parihari S, Srivastava S, Otto JJ, Nyalwidhe JO, Semmes OJ, Moran MF, Madugundu A, Mun DG, Pandey A, Mahoney KE, Shabanowitz J, Saxena S, Orsburn BC. Prakash A, et al. Among authors: mohammed y. Cancers (Basel). 2021 Oct 9;13(20):5034. doi: 10.3390/cancers13205034. Cancers (Basel). 2021. PMID: 34680183 Free PMC article.

2

Serum N-Glycome analysis reveals pancreatic cancer disease signatures.

Vreeker GCM, Hanna-Sawires RG, Mohammed Y, Bladergroen MR, Nicolardi S, Dotz V, Nouta J, Bonsing BA, Mesker WE, van der Burgt YEM, Wuhrer M, Tollenaar RAEM. Vreeker GCM, et al. Among authors: mohammed y. Cancer Med. 2020 Nov;9(22):8519-8529. doi: 10.1002/cam4.3439. Epub 2020 Sep 8. Cancer Med. 2020. PMID: 32898301 Free PMC article.

3

Simple proteomics data analysis in the object-oriented PowerShell.

Mohammed Y, Palmblad M. Mohammed Y, et al. Methods Mol Biol. 2013;1007:379-91. doi: 10.1007/978-1-62703-392-3_17. Methods Mol Biol. 2013. PMID: 23666736

4

MRMAssayDB: an integrated resource for validated targeted proteomics assays.

Bhowmick P, Mohammed Y, Borchers CH. Bhowmick P, et al. Among authors: mohammed y. Bioinformatics. 2018 Oct 15;34(20):3566-3571. doi: 10.1093/bioinformatics/bty385. Bioinformatics. 2018. PMID: 29762640 Free PMC article.

5

Oxonium Ion Guided Analysis of Quantitative Proteomics Data Reveals Site-Specific O-Glycosylation of Anterior Gradient Protein 2 (AGR2).

Pirro M, Mohammed Y, de Ru AH, Janssen GMC, Tjokrodirijo RTN, Madunić K, Wuhrer M, van Veelen PA, Hensbergen PJ. Pirro M, et al. Among authors: mohammed y. Int J Mol Sci. 2021 May 20;22(10):5369. doi: 10.3390/ijms22105369. Int J Mol Sci. 2021. PMID: 34065225 Free PMC article.

6

Longitudinal Plasma Proteomics Analysis Reveals Novel Candidate Biomarkers in Acute COVID-19.

Mohammed Y, Goodlett DR, Cheng MP, Vinh DC, Lee TC, Mcgeer A, Sweet D, Tran K, Lee T, Murthy S, Boyd JH, Singer J, Walley KR, Patrick DM, Quan C, Ismail S, Amar L, Pal A, Bassawon R, Fesdekjian L, Gou K, Lamontagne F, Marshall J, Haljan G, Fowler R, Winston BW, Russell JA; ARBs CORONA I. Mohammed Y, et al. J Proteome Res. 2022 Apr 1;21(4):975-992. doi: 10.1021/acs.jproteome.1c00863. Epub 2022 Feb 10. J Proteome Res. 2022. PMID: 35143212

7

Clostridioides difficile Phosphoproteomics Shows an Expansion of Phosphorylated Proteins in Stationary Growth Phase.

Smits WK, Mohammed Y, de Ru AH, Cordo' V, Friggen AH, van Veelen PA, Hensbergen PJ. Smits WK, et al. Among authors: mohammed y. mSphere. 2022 Feb 23;7(1):e0091121. doi: 10.1128/msphere.00911-21. Epub 2022 Jan 5. mSphere. 2022. PMID: 34986318 Free PMC article.

8

An Update on MRMAssayDB: A Comprehensive Resource for Targeted Proteomics Assays in the Community.

Bhowmick P, Roome S, Borchers CH, Goodlett DR, Mohammed Y. Bhowmick P, et al. Among authors: mohammed y. J Proteome Res. 2021 Apr 2;20(4):2105-2115. doi: 10.1021/acs.jproteome.0c00961. Epub 2021 Mar 8. J Proteome Res. 2021. PMID: 33683131 Free PMC article.

9

Identifying proteins in zebrafish embryos using spectral libraries generated from dissected adult organs and tissues.

van der Plas-Duivesteijn SJ, Mohammed Y, Dalebout H, Meijer A, Botermans A, Hoogendijk JL, Henneman AA, Deelder AM, Spaink HP, Palmblad M. van der Plas-Duivesteijn SJ, et al. Among authors: mohammed y. J Proteome Res. 2014 Mar 7;13(3):1537-44. doi: 10.1021/pr4010585. Epub 2014 Feb 5. J Proteome Res. 2014. PMID: 24460240 Free article.

10

Cloud parallel processing of tandem mass spectrometry based proteomics data.

Mohammed Y, Mostovenko E, Henneman AA, Marissen RJ, Deelder AM, Palmblad M. Mohammed Y, et al. J Proteome Res. 2012 Oct 5;11(10):5101-8. doi: 10.1021/pr300561q. Epub 2012 Sep 5. J Proteome Res. 2012. PMID: 22916831

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