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A survey of best practices for RNA-seq data analysis.
Conesa A, Madrigal P, Tarazona S, Gomez-Cabrero D, Cervera A, McPherson A, Szcześniak MW, Gaffney DJ, Elo LL, Zhang X, Mortazavi A. Conesa A, et al. Among authors: mortazavi a. Genome Biol. 2016 Jan 26;17:13. doi: 10.1186/s13059-016-0881-8. Genome Biol. 2016. PMID: 26813401 Free PMC article. Review.
Computation for ChIP-seq and RNA-seq studies.
Pepke S, Wold B, Mortazavi A. Pepke S, et al. Among authors: mortazavi a. Nat Methods. 2009 Nov;6(11 Suppl):S22-32. doi: 10.1038/nmeth.1371. Nat Methods. 2009. PMID: 19844228 Free PMC article. Review.
Scaffolding a Caenorhabditis nematode genome with RNA-seq.
Mortazavi A, Schwarz EM, Williams B, Schaeffer L, Antoshechkin I, Wold BJ, Sternberg PW. Mortazavi A, et al. Genome Res. 2010 Dec;20(12):1740-7. doi: 10.1101/gr.111021.110. Epub 2010 Oct 27. Genome Res. 2010. PMID: 20980554 Free PMC article.
RNA editing in the human ENCODE RNA-seq data.
Park E, Williams B, Wold BJ, Mortazavi A. Park E, et al. Among authors: mortazavi a. Genome Res. 2012 Sep;22(9):1626-33. doi: 10.1101/gr.134957.111. Genome Res. 2012. PMID: 22955975 Free PMC article.
Assessment of transcript reconstruction methods for RNA-seq.
Steijger T, Abril JF, Engström PG, Kokocinski F; RGASP Consortium; Hubbard TJ, Guigó R, Harrow J, Bertone P. Steijger T, et al. Nat Methods. 2013 Dec;10(12):1177-84. doi: 10.1038/nmeth.2714. Epub 2013 Nov 3. Nat Methods. 2013. PMID: 24185837 Free PMC article.
The common ground of genomics and systems biology.
Conesa A, Mortazavi A. Conesa A, et al. Among authors: mortazavi a. BMC Syst Biol. 2014;8 Suppl 2(Suppl 2):S1. doi: 10.1186/1752-0509-8-S2-S1. Epub 2014 Mar 13. BMC Syst Biol. 2014. PMID: 25033072 Free PMC article. Review.
Erratum to: A survey of best practices for RNA-seq data analysis.
Conesa A, Madrigal P, Tarazona S, Gomez-Cabrero D, Cervera A, McPherson A, Szcześniak MW, Gaffney DJ, Elo LL, Zhang X, Mortazavi A. Conesa A, et al. Among authors: mortazavi a. Genome Biol. 2016 Aug 26;17(1):181. doi: 10.1186/s13059-016-1047-4. Genome Biol. 2016. PMID: 27565134 Free PMC article. No abstract available.
Dynamic Gene Regulatory Networks of Human Myeloid Differentiation.
Ramirez RN, El-Ali NC, Mager MA, Wyman D, Conesa A, Mortazavi A. Ramirez RN, et al. Among authors: mortazavi a. Cell Syst. 2017 Apr 26;4(4):416-429.e3. doi: 10.1016/j.cels.2017.03.005. Epub 2017 Mar 29. Cell Syst. 2017. PMID: 28365152 Free PMC article.
304 results