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Reinspection of a Clinical Proteomics Tumor Analysis Consortium (CPTAC) Dataset with Cloud Computing Reveals Abundant Post-Translational Modifications and Protein Sequence Variants.
Prakash A, Taylor L, Varkey M, Hoxie N, Mohammed Y, Goo YA, Peterman S, Moghekar A, Yuan Y, Glaros T, Steele JR, Faridi P, Parihari S, Srivastava S, Otto JJ, Nyalwidhe JO, Semmes OJ, Moran MF, Madugundu A, Mun DG, Pandey A, Mahoney KE, Shabanowitz J, Saxena S, Orsburn BC. Prakash A, et al. Among authors: mun dg. Cancers (Basel). 2021 Oct 9;13(20):5034. doi: 10.3390/cancers13205034. Cancers (Basel). 2021. PMID: 34680183 Free PMC article.
Tyrosine Phosphoproteomics of Patient-Derived Xenografts Reveals Ephrin Type-B Receptor 4 Tyrosine Kinase as a Therapeutic Target in Pancreatic Cancer.
Renuse S, Madamsetty VS, Mun DG, Madugundu AK, Singh S, Udainiya S, Mangalaparthi KK, Kim MS, Liu R, Kumar SR, Krasnoperov V, Truty M, Graham RP, Gill PS, Mukhopadhyay D, Pandey A. Renuse S, et al. Among authors: mun dg. Cancers (Basel). 2021 Jul 7;13(14):3404. doi: 10.3390/cancers13143404. Cancers (Basel). 2021. PMID: 34298619 Free PMC article.
PASS-DIA: A Data-Independent Acquisition Approach for Discovery Studies.
Mun DG, Renuse S, Saraswat M, Madugundu A, Udainiya S, Kim H, Park SR, Zhao H, Nirujogi RS, Na CH, Kannan N, Yates JR 3rd, Lee SW, Pandey A. Mun DG, et al. Anal Chem. 2020 Nov 3;92(21):14466-14475. doi: 10.1021/acs.analchem.0c02513. Epub 2020 Oct 20. Anal Chem. 2020. PMID: 33079518
Proteomic Signature of Host Response to SARS-CoV-2 Infection in the Nasopharynx.
Vanderboom PM, Mun DG, Madugundu AK, Mangalaparthi KK, Saraswat M, Garapati K, Chakraborty R, Ebihara H, Sun J, Pandey A. Vanderboom PM, et al. Among authors: mun dg. Mol Cell Proteomics. 2021;20:100134. doi: 10.1016/j.mcpro.2021.100134. Epub 2021 Aug 14. Mol Cell Proteomics. 2021. PMID: 34400346 Free PMC article.
A mass spectrometry-based targeted assay for detection of SARS-CoV-2 antigen from clinical specimens.
Renuse S, Vanderboom PM, Maus AD, Kemp JV, Gurtner KM, Madugundu AK, Chavan S, Peterson JA, Madden BJ, Mangalaparthi KK, Mun DG, Singh S, Kipp BR, Dasari S, Singh RJ, Grebe SK, Pandey A. Renuse S, et al. Among authors: mun dg. EBioMedicine. 2021 Jul;69:103465. doi: 10.1016/j.ebiom.2021.103465. Epub 2021 Jul 3. EBioMedicine. 2021. PMID: 34229274 Free PMC article.
Integrated post-experiment monoisotopic mass refinement: an integrated approach to accurately assign monoisotopic precursor masses to tandem mass spectrometric data.
Jung HJ, Purvine SO, Kim H, Petyuk VA, Hyung SW, Monroe ME, Mun DG, Kim KC, Park JM, Kim SJ, Tolic N, Slysz GW, Moore RJ, Zhao R, Adkins JN, Anderson GA, Lee H, Camp DG 2nd, Yu MH, Smith RD, Lee SW. Jung HJ, et al. Among authors: mun dg. Anal Chem. 2010 Oct 15;82(20):8510-8. doi: 10.1021/ac101388b. Anal Chem. 2010. PMID: 20863060 Free PMC article.
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