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ONTO-ToolKit: enabling bio-ontology engineering via Galaxy.
Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M. Antezana E, et al. Among authors: mungall c. BMC Bioinformatics. 2010 Dec 21;11 Suppl 12(Suppl 12):S8. doi: 10.1186/1471-2105-11-S12-S8. BMC Bioinformatics. 2010. PMID: 21210987 Free PMC article.
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.
Diehl AD, Meehan TF, Bradford YM, Brush MH, Dahdul WM, Dougall DS, He Y, Osumi-Sutherland D, Ruttenberg A, Sarntivijai S, Van Slyke CE, Vasilevsky NA, Haendel MA, Blake JA, Mungall CJ. Diehl AD, et al. J Biomed Semantics. 2016 Jul 4;7(1):44. doi: 10.1186/s13326-016-0088-7. J Biomed Semantics. 2016. PMID: 27377652 Free PMC article.
FAIR Header Reference genome: a TRUSTworthy standard.
Wright A, Wilkinson MD, Mungall C, Cain S, Richards S, Sternberg P, Provin E, Jacobs JL, Geib S, Raciti D, Yook K, Stein L, Molik DC. Wright A, et al. Among authors: mungall c. Brief Bioinform. 2024 Mar 27;25(3):bbae122. doi: 10.1093/bib/bbae122. Brief Bioinform. 2024. PMID: 38555475
The Bioperl toolkit: Perl modules for the life sciences.
Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, Fuellen G, Gilbert JG, Korf I, Lapp H, Lehväslaiho H, Matsalla C, Mungall CJ, Osborne BI, Pocock MR, Schattner P, Senger M, Stein LD, Stupka E, Wilkinson MD, Birney E. Stajich JE, et al. Among authors: mungall cj. Genome Res. 2002 Oct;12(10):1611-8. doi: 10.1101/gr.361602. Genome Res. 2002. PMID: 12368254 Free PMC article.
Mapping between the OBO and OWL ontology languages.
Tirmizi SH, Aitken S, Moreira DA, Mungall C, Sequeda J, Shah NH, Miranker DP. Tirmizi SH, et al. Among authors: mungall c. J Biomed Semantics. 2011 Mar 7;2 Suppl 1(Suppl 1):S3. doi: 10.1186/2041-1480-2-S1-S3. J Biomed Semantics. 2011. PMID: 21388572 Free PMC article.
CLO: The cell line ontology.
Sarntivijai S, Lin Y, Xiang Z, Meehan TF, Diehl AD, Vempati UD, Schürer SC, Pang C, Malone J, Parkinson H, Liu Y, Takatsuki T, Saijo K, Masuya H, Nakamura Y, Brush MH, Haendel MA, Zheng J, Stoeckert CJ, Peters B, Mungall CJ, Carey TE, States DJ, Athey BD, He Y. Sarntivijai S, et al. Among authors: mungall cj. J Biomed Semantics. 2014 Aug 13;5:37. doi: 10.1186/2041-1480-5-37. eCollection 2014. J Biomed Semantics. 2014. PMID: 25852852 Free PMC article.
207 results