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Sequence-specific error profile of Illumina sequencers.
Nakamura K, Oshima T, Morimoto T, Ikeda S, Yoshikawa H, Shiwa Y, Ishikawa S, Linak MC, Hirai A, Takahashi H, Altaf-Ul-Amin M, Ogasawara N, Kanaya S. Nakamura K, et al. Nucleic Acids Res. 2011 Jul;39(13):e90. doi: 10.1093/nar/gkr344. Epub 2011 May 16. Nucleic Acids Res. 2011. PMID: 21576222 Free PMC article.
Efficacy prediction of jamu formulations by PLS modeling.
Afendi FM, Darusman LK, Morita AH, Altaf-Ul-Amin M, Takahashi H, Nakamura K, Tanaka K, Kanaya S. Afendi FM, et al. Among authors: nakamura k. Curr Comput Aided Drug Des. 2013 Mar;9(1):46-59. doi: 10.2174/1573409911309010005. Curr Comput Aided Drug Des. 2013. PMID: 23106776
Systematization of the protein sequence diversity in enzymes related to secondary metabolic pathways in plants, in the context of big data biology inspired by the KNApSAcK motorcycle database.
Ikeda S, Abe T, Nakamura Y, Kibinge N, Hirai Morita A, Nakatani A, Ono N, Ikemura T, Nakamura K, Altaf-Ul-Amin M, Kanaya S. Ikeda S, et al. Among authors: nakamura y, nakamura k. Plant Cell Physiol. 2013 May;54(5):711-27. doi: 10.1093/pcp/pct041. Epub 2013 Mar 18. Plant Cell Physiol. 2013. PMID: 23509110
Data Mining Methods for Omics and Knowledge of Crude Medicinal Plants toward Big Data Biology.
Afendi FM, Ono N, Nakamura Y, Nakamura K, Darusman LK, Kibinge N, Morita AH, Tanaka K, Horai H, Altaf-Ul-Amin M, Kanaya S. Afendi FM, et al. Among authors: nakamura y, nakamura k. Comput Struct Biotechnol J. 2013 Mar 23;4:e201301010. doi: 10.5936/csbj.201301010. eCollection 2013. Comput Struct Biotechnol J. 2013. PMID: 24688691 Free PMC article. Review.
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