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Critical Issues in Mycobiota Analysis.
Halwachs B, Madhusudhan N, Krause R, Nilsson RH, Moissl-Eichinger C, Högenauer C, Thallinger GG, Gorkiewicz G. Halwachs B, et al. Among authors: nilsson rh. Front Microbiol. 2017 Feb 14;8:180. doi: 10.3389/fmicb.2017.00180. eCollection 2017. Front Microbiol. 2017. PMID: 28261162 Free PMC article.
A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts.
Nilsson RH, Tedersoo L, Ryberg M, Kristiansson E, Hartmann M, Unterseher M, Porter TM, Bengtsson-Palme J, Walker DM, de Sousa F, Gamper HA, Larsson E, Larsson KH, Kõljalg U, Edgar RC, Abarenkov K. Nilsson RH, et al. Microbes Environ. 2015;30(2):145-50. doi: 10.1264/jsme2.ME14121. Epub 2015 Mar 19. Microbes Environ. 2015. PMID: 25786896 Free PMC article.
Megraft: a software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes and similar environmental datasets.
Bengtsson J, Hartmann M, Unterseher M, Vaishampayan P, Abarenkov K, Durso L, Bik EM, Garey JR, Eriksson KM, Nilsson RH. Bengtsson J, et al. Among authors: nilsson rh. Res Microbiol. 2012 Jul;163(6-7):407-12. doi: 10.1016/j.resmic.2012.07.001. Epub 2012 Jul 21. Res Microbiol. 2012. PMID: 22824070 Free article.
An open source chimera checker for the fungal ITS region.
Nilsson RH, Abarenkov K, Veldre V, Nylinder S, DE Wit P, Brosché S, Alfredsson JF, Ryberg M, Kristiansson E. Nilsson RH, et al. Mol Ecol Resour. 2010 Nov;10(6):1076-81. doi: 10.1111/j.1755-0998.2010.02850.x. Mol Ecol Resour. 2010. PMID: 21565119
78 results