Numanagić I - Search Results

1

Cypiripi: exact genotyping of CYP2D6 using high-throughput sequencing data.

Numanagić I, Malikić S, Pratt VM, Skaar TC, Flockhart DA, Sahinalp SC. Numanagić I, et al. Bioinformatics. 2015 Jun 15;31(12):i27-34. doi: 10.1093/bioinformatics/btv232. Bioinformatics. 2015. PMID: 26072492 Free PMC article.

2

SCALCE: boosting sequence compression algorithms using locally consistent encoding.

Hach F, Numanagic I, Alkan C, Sahinalp SC. Hach F, et al. Among authors: numanagic i. Bioinformatics. 2012 Dec 1;28(23):3051-7. doi: 10.1093/bioinformatics/bts593. Epub 2012 Oct 9. Bioinformatics. 2012. PMID: 23047557 Free PMC article.

3

ORMAN: optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.

Dao P, Numanagić I, Lin YY, Hach F, Karakoc E, Donmez N, Collins C, Eichler EE, Sahinalp SC. Dao P, et al. Among authors: numanagic i. Bioinformatics. 2014 Mar 1;30(5):644-51. doi: 10.1093/bioinformatics/btt591. Epub 2013 Oct 15. Bioinformatics. 2014. PMID: 24130305

4

DeeZ: reference-based compression by local assembly.

Hach F, Numanagić I, Sahinalp SC. Hach F, et al. Among authors: numanagic i. Nat Methods. 2014 Nov;11(11):1082-4. doi: 10.1038/nmeth.3133. Nat Methods. 2014. PMID: 25357237 No abstract available.

5

Comparison of high-throughput sequencing data compression tools.

Numanagić I, Bonfield JK, Hach F, Voges J, Ostermann J, Alberti C, Mattavelli M, Sahinalp SC. Numanagić I, et al. Nat Methods. 2016 Dec;13(12):1005-1008. doi: 10.1038/nmeth.4037. Epub 2016 Oct 24. Nat Methods. 2016. PMID: 27776113

6

Discovery and genotyping of novel sequence insertions in many sequenced individuals.

Kavak P, Lin YY, Numanagic I, Asghari H, Güngör T, Alkan C, Hach F. Kavak P, et al. Among authors: numanagic i. Bioinformatics. 2017 Jul 15;33(14):i161-i169. doi: 10.1093/bioinformatics/btx254. Bioinformatics. 2017. PMID: 28881988 Free PMC article.

7

Computational identification of micro-structural variations and their proteogenomic consequences in cancer.

Lin YY, Gawronski A, Hach F, Li S, Numanagic I, Sarrafi I, Mishra S, McPherson A, Collins CC, Radovich M, Tang H, Sahinalp SC. Lin YY, et al. Among authors: numanagic i. Bioinformatics. 2018 May 15;34(10):1672-1681. doi: 10.1093/bioinformatics/btx807. Bioinformatics. 2018. PMID: 29267878 Free PMC article.

8

Optimal compressed representation of high throughput sequence data via light assembly.

Ginart AA, Hui J, Zhu K, Numanagić I, Courtade TA, Sahinalp SC, Tse DN. Ginart AA, et al. Among authors: numanagic i. Nat Commun. 2018 Feb 8;9(1):566. doi: 10.1038/s41467-017-02480-6. Nat Commun. 2018. PMID: 29422526 Free PMC article.

9

Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes.

Numanagić I, Malikić S, Ford M, Qin X, Toji L, Radovich M, Skaar TC, Pratt VM, Berger B, Scherer S, Sahinalp SC. Numanagić I, et al. Nat Commun. 2018 Feb 26;9(1):828. doi: 10.1038/s41467-018-03273-1. Nat Commun. 2018. PMID: 29483503 Free PMC article.

10

Publisher Correction: Optimal compressed representation of high throughput sequence data via light assembly.

Ginart AA, Hui J, Zhu K, Numanagić I, Courtade TA, Sahinalp SC, Tse DN. Ginart AA, et al. Among authors: numanagic i. Nat Commun. 2018 Apr 26;9(1):1755. doi: 10.1038/s41467-018-03711-0. Nat Commun. 2018. PMID: 29700301 Free PMC article.

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