Oliveira AP - Search Results

1

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology.

Herrgård MJ, Swainston N, Dobson P, Dunn WB, Arga KY, Arvas M, Blüthgen N, Borger S, Costenoble R, Heinemann M, Hucka M, Le Novère N, Li P, Liebermeister W, Mo ML, Oliveira AP, Petranovic D, Pettifer S, Simeonidis E, Smallbone K, Spasić I, Weichart D, Brent R, Broomhead DS, Westerhoff HV, Kirdar B, Penttilä M, Klipp E, Palsson BØ, Sauer U, Oliver SG, Mendes P, Nielsen J, Kell DB. Herrgård MJ, et al. Among authors: oliveira ap. Nat Biotechnol. 2008 Oct;26(10):1155-60. doi: 10.1038/nbt1492. Nat Biotechnol. 2008. PMID: 18846089 Free PMC article.

2

A systems biology approach to study glucose repression in the yeast Saccharomyces cerevisiae.

Westergaard SL, Oliveira AP, Bro C, Olsson L, Nielsen J. Westergaard SL, et al. Among authors: oliveira ap. Biotechnol Bioeng. 2007 Jan 1;96(1):134-45. doi: 10.1002/bit.21135. Biotechnol Bioeng. 2007. PMID: 16878332

3

The importance of post-translational modifications in regulating Saccharomyces cerevisiae metabolism.

Oliveira AP, Sauer U. Oliveira AP, et al. FEMS Yeast Res. 2012 Mar;12(2):104-17. doi: 10.1111/j.1567-1364.2011.00765.x. Epub 2011 Dec 22. FEMS Yeast Res. 2012. PMID: 22128902 Review.

4

Reconstruction and logical modeling of glucose repression signaling pathways in Saccharomyces cerevisiae.

Christensen TS, Oliveira AP, Nielsen J. Christensen TS, et al. Among authors: oliveira ap. BMC Syst Biol. 2009 Jan 14;3:7. doi: 10.1186/1752-0509-3-7. BMC Syst Biol. 2009. PMID: 19144179 Free PMC article.

5

Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks.

Oliveira AP, Patil KR, Nielsen J. Oliveira AP, et al. BMC Syst Biol. 2008 Feb 8;2:17. doi: 10.1186/1752-0509-2-17. BMC Syst Biol. 2008. PMID: 18261202 Free PMC article.

6

Elucidation of Genetic Interactions in the Yeast GATA-Factor Network Using Bayesian Model Selection.

Milias-Argeitis A, Oliveira AP, Gerosa L, Falter L, Sauer U, Lygeros J. Milias-Argeitis A, et al. Among authors: oliveira ap. PLoS Comput Biol. 2016 Mar 11;12(3):e1004784. doi: 10.1371/journal.pcbi.1004784. eCollection 2016 Mar. PLoS Comput Biol. 2016. PMID: 26967983 Free PMC article.

7

Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator.

Usaite R, Jewett MC, Oliveira AP, Yates JR 3rd, Olsson L, Nielsen J. Usaite R, et al. Among authors: oliveira ap. Mol Syst Biol. 2009;5:319. doi: 10.1038/msb.2009.67. Epub 2009 Nov 3. Mol Syst Biol. 2009. PMID: 19888214 Free PMC article.

8

Unraveling condition-dependent networks of transcription factors that control metabolic pathway activity in yeast.

Fendt SM, Oliveira AP, Christen S, Picotti P, Dechant RC, Sauer U. Fendt SM, et al. Among authors: oliveira ap. Mol Syst Biol. 2010 Nov 30;6:432. doi: 10.1038/msb.2010.91. Mol Syst Biol. 2010. PMID: 21119627 Free PMC article.

9

Regulation of yeast central metabolism by enzyme phosphorylation.

Oliveira AP, Ludwig C, Picotti P, Kogadeeva M, Aebersold R, Sauer U. Oliveira AP, et al. Mol Syst Biol. 2012;8:623. doi: 10.1038/msb.2012.55. Mol Syst Biol. 2012. PMID: 23149688 Free PMC article.

10

Modeling Lactococcus lactis using a genome-scale flux model.

Oliveira AP, Nielsen J, Förster J. Oliveira AP, et al. BMC Microbiol. 2005 Jun 27;5:39. doi: 10.1186/1471-2180-5-39. BMC Microbiol. 2005. PMID: 15982422 Free PMC article.

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