Omelchenko MV - Search Results

1

Bioinformatics and functional analysis define four distinct groups of AlkB DNA-dioxygenases in bacteria.

van den Born E, Bekkelund A, Moen MN, Omelchenko MV, Klungland A, Falnes PØ. van den Born E, et al. Among authors: omelchenko mv. Nucleic Acids Res. 2009 Nov;37(21):7124-36. doi: 10.1093/nar/gkp774. Nucleic Acids Res. 2009. PMID: 19786499 Free PMC article.

2

Viral AlkB proteins repair RNA damage by oxidative demethylation.

van den Born E, Omelchenko MV, Bekkelund A, Leihne V, Koonin EV, Dolja VV, Falnes PØ. van den Born E, et al. Among authors: omelchenko mv. Nucleic Acids Res. 2008 Oct;36(17):5451-61. doi: 10.1093/nar/gkn519. Epub 2008 Aug 21. Nucleic Acids Res. 2008. PMID: 18718927 Free PMC article.

3

CDD: a Conserved Domain Database for the functional annotation of proteins.

Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL, Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH. Marchler-Bauer A, et al. Among authors: omelchenko mv. Nucleic Acids Res. 2011 Jan;39(Database issue):D225-9. doi: 10.1093/nar/gkq1189. Epub 2010 Nov 24. Nucleic Acids Res. 2011. PMID: 21109532 Free PMC article.

4

Non-homologous isofunctional enzymes: a systematic analysis of alternative solutions in enzyme evolution.

Omelchenko MV, Galperin MY, Wolf YI, Koonin EV. Omelchenko MV, et al. Biol Direct. 2010 Apr 30;5:31. doi: 10.1186/1745-6150-5-31. Biol Direct. 2010. PMID: 20433725 Free PMC article.

5

Recurrent intragenomic recombination leading to sequence homogenization during the evolution of the lipoyl-binding domain.

Omelchenko MV, Makarova KS, Koonin EV. Omelchenko MV, et al. FEMS Microbiol Lett. 2002 Apr 9;209(2):255-60. doi: 10.1111/j.1574-6968.2002.tb11140.x. FEMS Microbiol Lett. 2002. PMID: 12007814

6

Genome-wide molecular clock and horizontal gene transfer in bacterial evolution.

Novichkov PS, Omelchenko MV, Gelfand MS, Mironov AA, Wolf YI, Koonin EV. Novichkov PS, et al. Among authors: omelchenko mv. J Bacteriol. 2004 Oct;186(19):6575-85. doi: 10.1128/JB.186.19.6575-6585.2004. J Bacteriol. 2004. PMID: 15375139 Free PMC article.

7

Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ.

Omelchenko MV, Makarova KS, Wolf YI, Rogozin IB, Koonin EV. Omelchenko MV, et al. Genome Biol. 2003;4(9):R55. doi: 10.1186/gb-2003-4-9-r55. Epub 2003 Aug 29. Genome Biol. 2003. PMID: 12952534 Free PMC article.

8

Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation.

Liu Y, Zhou J, Omelchenko MV, Beliaev AS, Venkateswaran A, Stair J, Wu L, Thompson DK, Xu D, Rogozin IB, Gaidamakova EK, Zhai M, Makarova KS, Koonin EV, Daly MJ. Liu Y, et al. Among authors: omelchenko mv. Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):4191-6. doi: 10.1073/pnas.0630387100. Epub 2003 Mar 21. Proc Natl Acad Sci U S A. 2003. PMID: 12651953 Free PMC article.

9

Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance.

Omelchenko MV, Wolf YI, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Daly MJ, Koonin EV, Makarova KS. Omelchenko MV, et al. BMC Evol Biol. 2005 Oct 20;5:57. doi: 10.1186/1471-2148-5-57. BMC Evol Biol. 2005. PMID: 16242020 Free PMC article.

10

Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase family.

Kuznetsova E, Proudfoot M, Gonzalez CF, Brown G, Omelchenko MV, Borozan I, Carmel L, Wolf YI, Mori H, Savchenko AV, Arrowsmith CH, Koonin EV, Edwards AM, Yakunin AF. Kuznetsova E, et al. Among authors: omelchenko mv. J Biol Chem. 2006 Nov 24;281(47):36149-61. doi: 10.1074/jbc.M605449200. Epub 2006 Sep 21. J Biol Chem. 2006. PMID: 16990279 Free article.

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